RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 EMILIN2Q9BXX0 1053 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 ABCB6Q9NP58 842 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 SEPT11Q9NVA2 429 aaKnown RBP17.57■□□□□ 0.4
VPS4A-202ENST00000562754 AFF4Q9UHB7 1163 aaKnown RBP17.57■□□□□ 0.4
VPS4A-202ENST00000562754 CYTH4Q9UIA0 394 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 NENFQ9UMX5 172 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 A0A087X0T9 212 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 TULP2O00295 520 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 AP1G2O75843 785 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 BEST1O76090 585 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 SEC24AO95486 1093 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 FAM228BP0C875 321 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 FAM200BP0CF97 657 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 NPR3P17342 541 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 ANXA13P27216 316 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 CDH5P33151 784 aaPredicted RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 KIF11P52732 1056 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 BCAT1P54687 386 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 PDE4CQ08493 712 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 ADCY1Q08828 1119 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 BST2Q10589 180 aaKnown RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 CLEC16AQ2KHT3 1053 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 TPGS2Q68CL5 300 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 LILRA6Q6PI73 481 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 TRIM72Q6ZMU5 477 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 CLEC20AQ6ZU45 233 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 WDTC1Q8N5D0 677 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 C1orf131Q8NDD1 294 aaKnown RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 CCDC112Q8NEF3 446 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 ZNF461Q8TAF7 563 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 SPPL2BQ8TCT7 592 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 C2orf15Q8WU43 125 aaKnown RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 SECISBP2LQ93073 1101 aaKnown RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 MRPL38Q96DV4 380 aaKnown RBP17.56■□□□□ 0.4
VPS4A-202ENST00000562754 DUSP16Q9BY84 665 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 LHX5Q9H2C1 402 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 PDCL3Q9H2J4 239 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 PRDM12Q9H4Q4 367 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 TAS2R14Q9NYV8 317 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 HESX1Q9UBX0 185 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 ADAMTS1Q9UHI8 967 aa17.56■□□□□ 0.4
VPS4A-202ENST00000562754 MTCL1Q9Y4B5 1905 aaKnown RBP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 TGM5O43548 720 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 CLASP2O75122 1294 aaKnown RBP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 SOAT2O75908 522 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 LSM8O95777 96 aaKnown RBP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 HAPLN1P10915 354 aaPredicted RBP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 KLRC2P26717 231 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 GPD2P43304 727 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 MAGEA11P43364 429 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 DUSP4Q13115 394 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 GRIN2CQ14957 1233 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 NAA35Q5VZE5 725 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 CCDC42Q96M95 316 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 ZNF830Q96NB3 372 aaPredicted RBP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.55■□□□□ 0.4
VPS4A-202ENST00000562754 SPTLC3Q9NUV7 552 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 FBXW11Q9UKB1 542 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 SLC27A5Q9Y2P5 690 aa17.55■□□□□ 0.4
VPS4A-202ENST00000562754 TRANK1O15050 2925 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 ZNF263O14978 683 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 AKR1B10O60218 316 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 GLUD1P00367 558 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 SETSIPP0DME0 302 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 UNGP13051 313 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-202ENST00000562754 ATF2P15336 505 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 GPR15P49685 360 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 CLCN4P51793 760 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 MAP3K7CLP57077 242 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 GFPT1Q06210 699 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-202ENST00000562754 SLC18A3Q16572 532 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 PTPROQ16827 1216 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 VSTM1Q6UX27 236 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 VPS36Q86VN1 386 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 DNAAF5Q86Y56 855 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 TMEM35BQ8NCS4 154 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 SLC22A17Q8WUG5 538 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 SLC35F5Q8WV83 523 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 KCNK16Q96T55 309 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 DEF6Q9H4E7 631 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 CSNK1G1Q9HCP0 422 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 DMAP1Q9NPF5 467 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-202ENST00000562754 GREB1Q4ZG55 1949 aa17.54■□□□□ 0.4
VPS4A-202ENST00000562754 HHLA1C9JL84 531 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 F8VP50 259 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 XPO1O14980 1071 aaKnown RBP17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PER2O15055 1255 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 GABBR2O75899 941 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 SPATA31D3P0C874 917 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PLA2G4AP47712 749 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 RGS7P49802 495 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 CENPCQ03188 943 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PDCLQ13371 301 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 DUSP6Q16828 381 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PTPN20Q4JDL3 420 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 ZNF697Q5TEC3 545 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 SDHAF4Q5VUM1 108 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PMF1Q6P1K2 205 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 SPATA31D4Q6ZUB0 917 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 GPRIN1Q7Z2K8 1008 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms