RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 BUB1O43683 1085 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 TBC1D4O60343 1298 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 ATP2C2O75185 946 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 PALMO75781 387 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 FAM200BP0CF97 657 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 NOP2P46087 812 aaKnown RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 PDE4CQ08493 712 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 MAMLD1Q13495 774 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 NFE2Q16621 373 aaPredicted RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 CFAP221Q4G0U5 840 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 DNTTIP2Q5QJE6 756 aaKnown RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 FAM171A1Q5VUB5 890 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 DNAJC24Q6P3W2 148 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 C4orf50Q6ZRC1 276 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 TMEM173Q86WV6 379 aaPredicted RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 DCP1BQ8IZD4 617 aaKnown RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 COLGALT1Q8NBJ5 622 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 FNIP1Q8TF40 1166 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 BCL7CQ8WUZ0 217 aaPredicted RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 KCTD13Q8WZ19 329 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 CLP1Q92989 425 aaKnown RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 MCRS1Q96EZ8 462 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 TTPALQ9BTX7 342 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 HERC2P3Q9BVR0 1158 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 B3GNT5Q9BYG0 378 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 OSGEPQ9NPF4 335 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 AAASQ9NRG9 546 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 CHST7Q9NS84 486 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 INSL6Q9Y581 213 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 MRPL42Q9Y6G3 142 aaKnown RBP14.71□□□□□ -0.05
CLK3-209ENST00000562670 NLRC5Q86WI3 1866 aa14.71□□□□□ -0.05
CLK3-209ENST00000562670 PATJQ8NI35 1801 aa14.71□□□□□ -0.06
CLK3-209ENST00000562670 KIAA1671Q9BY89 1806 aa14.71□□□□□ -0.06
CLK3-209ENST00000562670 ATMINO43313 823 aaPredicted RBP14.7□□□□□ -0.06
CLK3-209ENST00000562670 BUB1BO60566 1050 aaPredicted RBP14.7□□□□□ -0.06
CLK3-209ENST00000562670 SOD2P04179 222 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 ERBB2P04626 1255 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 LINC00271P0C7V0 271 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 SSTR3P32745 418 aaPredicted RBP14.7□□□□□ -0.06
CLK3-209ENST00000562670 MAN1A1P33908 653 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 NAP1L1P55209 391 aaKnown RBP14.7□□□□□ -0.06
CLK3-209ENST00000562670 USP41Q3LFD5 358 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 PAPD7Q5XG87 772 aaKnown RBP14.7□□□□□ -0.06
CLK3-209ENST00000562670 CLEC20AQ6ZU45 233 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 ARCQ7LC44 396 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 XYLT1Q86Y38 959 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 HERC6Q8IVU3 1022 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 UBA3Q8TBC4 463 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 PIK3R5Q8WYR1 880 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 MYLPFQ96A32 169 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 RAD9AQ99638 391 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 KRT82Q9NSB4 513 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 SPG21Q9NZD8 308 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 BACE2Q9Y5Z0 518 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 SLC4A7Q9Y6M7 1214 aa14.7□□□□□ -0.06
CLK3-209ENST00000562670 SIGLEC16A6NMB1 481 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 E5RJQ4 531 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 PRLRP16471 622 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 ADORA2BP29275 332 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 SLC1A1P43005 524 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 AMPD2Q01433 879 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 MEI1Q5TIA1 1274 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 PMF1Q6P1K2 205 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 SCML4Q8N228 414 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 NIPA2Q8N8Q9 360 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 C2orf15Q8WU43 125 aaKnown RBP14.69□□□□□ -0.06
CLK3-209ENST00000562670 TMEM169Q96HH4 297 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 SYNCQ9H7C4 482 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 L2HGDHQ9H9P8 463 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 DMAP1Q9NPF5 467 aaPredicted RBP14.69□□□□□ -0.06
CLK3-209ENST00000562670 CXXC1Q9P0U4 656 aaPredicted RBP14.69□□□□□ -0.06
CLK3-209ENST00000562670 MTRRQ9UBK8 725 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 ANAPC7Q9UJX3 599 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 NR2E3Q9Y5X4 410 aa14.69□□□□□ -0.06
CLK3-209ENST00000562670 COL4A4P53420 1690 aaPredicted RBP14.68□□□□□ -0.06
CLK3-209ENST00000562670 TMEM191CA6NGB0 347 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 MIF4GDA9UHW6 222 aaKnown RBP14.68□□□□□ -0.06
CLK3-209ENST00000562670 CES2O00748 559 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 AP1G2O75843 785 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 ATP2A2P16615 1042 aaKnown RBP14.68□□□□□ -0.06
CLK3-209ENST00000562670 SYN1P17600 705 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 PBX3P40426 434 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 MAGEA11P43364 429 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 DSG1Q02413 1049 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 CCDC142Q17RM4 750 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 CTXN3Q4LDR2 81 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 RAB41Q5JT25 222 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 RTP2Q5QGT7 225 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 COL13A1Q5TAT6 717 aaPredicted RBP14.68□□□□□ -0.06
CLK3-209ENST00000562670 SLC8B1Q6J4K2 584 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 OLFML1Q6UWY5 402 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 VSTM1Q6UX27 236 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 DAAM2Q86T65 1068 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 DDX53Q86TM3 631 aaKnown RBP14.68□□□□□ -0.06
CLK3-209ENST00000562670 NT5DC3Q86UY8 548 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 FIBCD1Q8N539 461 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 FEZF2Q8TBJ5 459 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 CEP295NLQ96MC4 621 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 LPIN3Q9BQK8 851 aa14.68□□□□□ -0.06
CLK3-209ENST00000562670 MED10Q9BTT4 135 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms