RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HIC1Q14526 733 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PWP2Q15269 919 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ARL13BQ3SXY8 428 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ZCWPW2Q504Y3 356 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 HS1BP3Q53T59 392 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PPP2R2DQ66LE6 453 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CD302Q8IX05 232 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 DNAAF3Q8N9W5 541 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 B3GALNT2Q8NCR0 500 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RFFLQ8WZ73 363 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TRIM11Q96F44 468 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 DDX27Q96GQ7 796 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PDLIM2Q96JY6 352 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 MRPL9Q9BYD2 267 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 C10orf88Q9H8K7 445 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PARVAQ9NVD7 372 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ASNSD1Q9NWL6 643 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SIK3Q9Y2K2 1263 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ALG6Q9Y672 507 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 COL1A2P08123 1366 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ECM29Q5VYK3 1845 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EIF3CLB5ME19 914 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PPP1R37O75864 691 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ASS1P00966 412 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CFHP08603 1231 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RALAP11233 206 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 VDRP11473 427 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EPHB2P29323 1055 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 NDUFV1P49821 464 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PPIGQ13427 754 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TAF5Q15542 800 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ANO4Q32M45 955 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ATP13A4Q4VNC1 1196 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 FAXCQ5TGI0 409 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SCARA3Q6AZY7 606 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 FUT10Q6P4F1 479 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 AGMOQ6ZNB7 445 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EPM2AIP1Q7L775 607 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RHOT2Q8IXI1 618 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC26Q8TAB7 109 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EPS8L1Q8TE68 723 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 DYDC1Q8WWB3 177 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RXFP2Q8WXD0 754 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CCDC97Q96F63 343 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CFAP57Q96MR6 1250 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RPRD1AQ96P16 312 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TWNKQ96RR1 684 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EIF3CQ99613 913 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 NTPCRQ9BSD7 190 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 HAPLN2Q9GZV7 340 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TSR3Q9UJK0 312 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 GIT1Q9Y2X7 761 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PCDHB5Q9Y5E4 795 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 BRWD1Q9NSI6 2320 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 MCM3APO60318 1980 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 A0A0U1RQF3 1178 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CARNS1A5YM72 827 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TULP2O00295 520 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CCL16O15467 120 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 GAS8O95995 478 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ZBED1O96006 694 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ITGB1P05556 798 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 HOXA11P31270 313 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 AVPR1AP37288 418 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 LHX1P48742 406 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SNRPFP62306 86 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RPL7AP62424 266 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 GRIK3Q13003 919 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SEPT6Q14141 434 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 EFHC2Q5JST6 749 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 NPAS4Q8IUM7 802 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 LRRC43Q8N309 656 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 DNAJC5GQ8N7S2 189 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 FAM172AQ8WUF8 416 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ATG4AQ8WYN0 398 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 CELF6Q96J87 481 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TCF25Q9BQ70 676 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TTPALQ9BTX7 342 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ACBD3Q9H3P7 528 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 TLE6Q9H808 572 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 VPS37BQ9H9H4 285 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 ADAM28Q9UKQ2 775 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 UTP11Q9Y3A2 253 aaKnown RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 Q9Y3F1 56 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SH3BP1Q9Y3L3 701 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 FAM169AQ9Y6X4 670 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 FRMD3A2A2Y4 597 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 EFCAB8A8MWE9 144 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 RFXAPO00287 272 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 ENPP3O14638 875 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 P4HA2O15460 535 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 MSI1O43347 362 aaKnown RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 MYOGP15173 224 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 TCP1P17987 556 aaKnown RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 XPAP23025 273 aaPredicted RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 BCAT1P54687 386 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 CBX2Q14781 532 aaPredicted RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 NFE2Q16621 373 aaPredicted RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 BMT2Q1RMZ1 405 aa5.71□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms