RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRAV19A0A0A6YYK7 116 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 C2orf78A6NCI8 922 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 CHURC1-FNTBB4DL54 471 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 LILRB5O75023 590 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 CLSTN1O94985 981 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 TDGF1P13385 188 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 PFKFB1P16118 471 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 PTPN1P18031 435 aaKnown RBP10.92□□□□□ -0.66
LDLR-214ENST00000560628 CMA1P23946 247 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 MAGEA11P43364 429 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 FNTBP49356 437 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 NRLP54845 237 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 CDH8P55286 799 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 TNNC1P63316 161 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 DMWDQ09019 674 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 PPP2R5DQ14738 602 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 MAPRE1Q15691 268 aaKnown RBP10.92□□□□□ -0.66
LDLR-214ENST00000560628 LPAL2Q16609 132 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 DGKKQ5KSL6 1271 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 HEATR6Q6AI08 1181 aaKnown RBP10.92□□□□□ -0.66
LDLR-214ENST00000560628 C1orf228Q6PIY5 440 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 C12orf56Q8IXR9 622 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 KIAA0895Q8NCT3 520 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 MYCBPAPQ8TBZ2 947 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 TRMT2BQ96GJ1 504 aaKnown RBP10.92□□□□□ -0.66
LDLR-214ENST00000560628 PCED1BQ96HM7 432 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 SPATA32Q96LK8 384 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 IER2Q9BTL4 223 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 DPEP3Q9H4B8 488 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 CGNQ9P2M7 1197 aaKnown RBP10.92□□□□□ -0.66
LDLR-214ENST00000560628 MYO15AQ9UKN7 3530 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 VPS13AQ96RL7 3174 aa10.92□□□□□ -0.66
LDLR-214ENST00000560628 CFAP54Q96N23 3096 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 SOBPA7XYQ1 873 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 A8MXQ7 604 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 CLDN5O00501 218 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 TACC1O75410 805 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 ABL1P00519 1130 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 CKMP06732 381 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 USP17L7P0C7H9 530 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 HDCP19113 662 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 ANXA13P27216 316 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 USP46P62068 366 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 SRSF5Q13243 272 aaKnown RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 BIRC3Q13489 604 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 NAIF1Q69YI7 327 aaPredicted RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 VSTM1Q6UX27 236 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 FSIP1Q8NA03 581 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 GOLGA5Q8TBA6 731 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 PARD3BQ8TEW8 1205 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 RMDN1Q96DB5 314 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 SPATA17Q96L03 361 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 B3GNT5Q9BYG0 378 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 FAM126AQ9BYI3 521 aaPredicted RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 XYLT2Q9H1B5 865 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 EPC1Q9H2F5 836 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 LINC00597Q9H2U6 94 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 KIF9Q9HAQ2 790 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 FBRSL1Q9HCM7 1045 aaKnown RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 DMAC2Q9NW81 257 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 DUS2Q9NX74 493 aaKnown RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 GCNT4Q9P109 453 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 SMG5Q9UPR3 1016 aaKnown RBP10.91□□□□□ -0.66
LDLR-214ENST00000560628 WNT6Q9Y6F9 365 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 GPR179Q6PRD1 2367 aa10.91□□□□□ -0.66
LDLR-214ENST00000560628 COL4A2P08572 1712 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 LRRIQ3A6PVS8 624 aaPredicted RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 F8VP50 259 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 K7ESF4 209 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 HRO43593 1189 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 C4BPAP04003 597 aaKnown RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 FAM163BP0C2L3 166 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 PRR29P0C7W0 189 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 ATICP31939 592 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 SYKP43405 635 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 RAP1GAPP47736 663 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 GALK1P51570 392 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 NDUFA8P51970 172 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 CACNA2D1P54289 1103 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 DLG4P78352 724 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 KRT85P78386 507 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 FAM160A1Q05DH4 1040 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 GRSF1Q12849 480 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-214ENST00000560628 PSMD2Q13200 908 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 NCOA4Q13772 614 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 CCINQ13939 588 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 ZNF268Q14587 947 aaPredicted RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 MTF1Q14872 753 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 PDGFRLQ15198 375 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 TDRD10Q5VZ19 366 aaKnown RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 FSTL4Q6MZW2 842 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 PKN3Q6P5Z2 889 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 SCARA5Q6ZMJ2 495 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 PRR23BQ6ZRT6 265 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 DENND5BQ6ZUT9 1274 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 SH3RF2Q8TEC5 729 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 SYAP1Q96A49 352 aaPredicted RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 CHFRQ96EP1 664 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 ZNF518BQ9C0D4 1074 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 KCTD10Q9H3F6 313 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms