RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 IPO4Q8TEX9 1081 aaKnown RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 STK32AQ8WU08 396 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 HERVK_113Q902F9 699 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 TMEM209Q96SK2 561 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 PKMYT1Q99640 499 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 LBHD1Q9BQE6 289 aaPredicted RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 MED10Q9BTT4 135 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 DUSP16Q9BY84 665 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 PARVAQ9NVD7 372 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 TJP2Q9UDY2 1190 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 JRKLQ9Y4A0 524 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 MRPL42Q9Y6G3 142 aaKnown RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 SCINQ9Y6U3 715 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 FNDC1Q4ZHG4 1894 aaPredicted RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 TCRBV5S1A1TA0A578 114 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ENC1O14682 589 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 EFEMP2O95967 443 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ERBB2P04626 1255 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ATP1A1P05023 1023 aaKnown RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 LAG3P18627 525 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 RGS7P49802 495 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 SLC8A3P57103 927 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 HTRA4P83105 476 aaPredicted RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 MRPL58Q14197 206 aaKnown RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 ZNF268Q14587 947 aaPredicted RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 MAPRE1Q15691 268 aaKnown RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 DAAM2Q86T65 1068 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 FAM35AQ86V20 835 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 LRRTM3Q86VH5 581 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 C3orf20Q8ND61 904 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 MYLPFQ96A32 169 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 IGSF21Q96ID5 467 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 B3GALT6Q96L58 329 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ZNF558Q96NG5 402 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 SLC4A5Q9BY07 1137 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 MIS12Q9H081 205 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 GOLPH3Q9H4A6 298 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CALCOCO1Q9P1Z2 691 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 WDR35Q9P2L0 1181 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CARNS1A5YM72 827 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CCDC85CA6NKD9 419 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 E5RJQ4 531 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 XPO1O14980 1071 aaKnown RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 CAPN15O75808 1086 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 URI1O94763 535 aaPredicted RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 FTCDO95954 541 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 FAM200BP0CF97 657 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 NPR3P17342 541 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 PLA2G4AP47712 749 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CDR1P51861 262 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 GSCP56915 257 aaPredicted RBP11.84□□□□□ -0.51
USP3-218ENST00000560202 SNX16P57768 344 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CTXN3Q4LDR2 81 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 RTP2Q5QGT7 225 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ZNF280DQ6N043 979 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 DNAJC24Q6P3W2 148 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 CLEC20AQ6ZU45 233 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 TAS1R1Q7RTX1 841 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 TMEM110Q86TL2 294 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 XYLT1Q86Y38 959 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 KRT222Q8N1A0 295 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 SLC39A11Q8N1S5 342 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 FEZF2Q8TBJ5 459 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 HSFY1Q96LI6 401 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ZBED2Q9BTP6 218 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 TTPALQ9BTX7 342 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ZCWPW1Q9H0M4 648 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ABCB6Q9NP58 842 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 KRT82Q9NSB4 513 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 TMLHEQ9NVH6 421 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 ANAPC7Q9UJX3 599 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 SLC4A7Q9Y6M7 1214 aa11.84□□□□□ -0.51
USP3-218ENST00000560202 TSC2P49815 1807 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 OR6C75A6NL08 312 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 GOLGA8SH3BPF8 625 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 H7C4K7 107 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 PIK3R2O00459 728 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 AP1G2O75843 785 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 GABBR2O75899 941 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 BEST1O76090 585 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 GJB6O95452 261 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 RPL34P49207 117 aaKnown RBP11.83□□□□□ -0.52
USP3-218ENST00000560202 MAP3K7CLP57077 242 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 TAP1Q03518 808 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 MESDQ14696 234 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 PPP1R15BQ5SWA1 713 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 MEI1Q5TIA1 1274 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 PAPD7Q5XG87 772 aaKnown RBP11.83□□□□□ -0.52
USP3-218ENST00000560202 C11orf63Q6NUN7 778 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 PIGZQ86VD9 579 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 HERC6Q8IVU3 1022 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 RNF168Q8IYW5 571 aaPredicted RBP11.83□□□□□ -0.52
USP3-218ENST00000560202 DCP1BQ8IZD4 617 aaKnown RBP11.83□□□□□ -0.52
USP3-218ENST00000560202 COLGALT1Q8NBJ5 622 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 PHOSPHO2Q8TCD6 241 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 MCRS1Q96EZ8 462 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 SMARCD1Q96GM5 515 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 BTBD6Q96KE9 485 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 SLC9A7Q96T83 725 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 SELENOOQ9BVL4 669 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms