RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CHRNB2P17787 502 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 MAGEA11P43364 429 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 ZBED6P86452 979 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 PTK2Q05397 1052 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 TWF1Q12792 350 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 GSE1Q14687 1217 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 CNGA2Q16280 664 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 PKDCCQ504Y2 493 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 TAF3Q5VWG9 929 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 ANKRD54Q6NXT1 300 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 LCLAT1Q6UWP7 414 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 EP400NLQ6ZTU2 488 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 CLEC20AQ6ZU45 233 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 SCN4BQ8IWT1 228 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 OLIG1Q8TAK6 271 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 EPS8L1Q8TE68 723 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 GIPC2Q8TF65 315 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 HDAC7Q8WUI4 952 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 CASP10Q92851 521 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 ZNF707Q96C28 371 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-227ENST00000557269 APOL5Q9BWW9 433 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 PLEKHA4Q9H4M7 779 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 HSFX1Q9UBD0 423 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 MAFFQ9ULX9 164 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 MYO6Q9UM54 1294 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 PTPRDP23468 1912 aa13.58□□□□□ -0.23
SHMT2-227ENST00000557269 CCDC195A0A1B0GUA6 201 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 FAM170AA1A519 330 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 HHLA1C9JL84 531 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 F8VP50 259 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 CCL16O15467 120 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 GABBR2O75899 941 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 MMEP08473 750 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 SKILP12757 684 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 KRT9P35527 623 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 GRIK1P39086 918 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 TUFMP49411 452 aaKnown RBP13.58□□□□□ -0.24
SHMT2-227ENST00000557269 ADKP55263 362 aaKnown RBP13.58□□□□□ -0.24
SHMT2-227ENST00000557269 MAP3K7CLP57077 242 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 MTMR3Q13615 1198 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 PPM1LQ5SGD2 360 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 LIN9Q5TKA1 542 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 SFMBT2Q5VUG0 894 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 SMYD5Q6GMV2 418 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 VSTM1Q6UX27 236 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 TMC5Q6UXY8 1006 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 CCDC149Q6ZUS6 474 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 WDTC1Q8N5D0 677 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 ANKRD52Q8NB46 1076 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 PABPC5Q96DU9 382 aaKnown RBP13.58□□□□□ -0.24
SHMT2-227ENST00000557269 SMARCD1Q96GM5 515 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 DUSP16Q9BY84 665 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 DNAI2Q9GZS0 605 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 S1PR5Q9H228 398 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 CSNK1G1Q9HCP0 422 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 AIPL1Q9NZN9 384 aa13.58□□□□□ -0.24
SHMT2-227ENST00000557269 LUC7L2Q9Y383 392 aaKnown RBP13.58□□□□□ -0.24
SHMT2-227ENST00000557269 MTCL1Q9Y4B5 1905 aaKnown RBP13.58□□□□□ -0.24
SHMT2-227ENST00000557269 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-227ENST00000557269 M0QYV0 167 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 NRG2O14511 850 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-227ENST00000557269 MFAP3LO75121 409 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 FAM200BP0CF97 657 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 FERP16591 822 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 CDC25BP30305 580 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 BPIFB4P59827 614 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 PDE4CQ08493 712 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 SKIV2LQ15477 1246 aaKnown RBP13.57□□□□□ -0.24
SHMT2-227ENST00000557269 CLUL1Q15846 466 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 ASIC2Q16515 512 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 RARS2Q5T160 578 aaKnown RBP13.57□□□□□ -0.24
SHMT2-227ENST00000557269 GPRIN1Q7Z2K8 1008 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 PASD1Q8IV76 773 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 SECISBP2LQ93073 1101 aaKnown RBP13.57□□□□□ -0.24
SHMT2-227ENST00000557269 IQCDQ96DY2 449 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 MSLNLQ96KJ4 702 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 C8orf48Q96LL4 319 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 PCDHB18PQ96TA0 734 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 SYT11Q9BT88 431 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 PRDM6Q9NQX0 595 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 HCFC1R1Q9NWW0 138 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 CYTH4Q9UIA0 394 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 ATP8B3O60423 1300 aa13.57□□□□□ -0.24
SHMT2-227ENST00000557269 SLC38A8A6NNN8 435 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 H3BQ06 376 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 TNFRSF10BO14763 440 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 MED7O43513 233 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 NCK2O43639 380 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PAPLNO95428 1278 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PLEKP08567 350 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 NPR3P17342 541 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 GPD2P43304 727 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 ALDH1A3P47895 512 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 MRE11P49959 708 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PDE6CP51160 858 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 USP46P62068 366 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 RPL10AP62906 217 aaKnown RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 NTHL1P78549 312 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 FMO1Q01740 532 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 TRIM14Q14142 442 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms