RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PLEKHA5Q9HAU0 1116 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 TRPV4Q9HBA0 871 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 SLC8A2Q9UPR5 921 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 WASF3Q9UPY6 502 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 YIPF1Q9Y548 306 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 NUB1Q9Y5A7 615 aa10.87□□□□□ -0.67
SCFD1-220ENST00000556486 FREM2Q5SZK8 3169 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 NUP205Q92621 2012 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 PATE3B3GLJ2 98 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 M0QZQ0 153 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 OAZ2O95190 189 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 VNN2O95498 520 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 ADRB2P07550 413 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 MAPTP10636 758 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 HARSP12081 509 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 CDK11BP21127 795 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 LRPAP1P30533 357 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 MCM4P33991 863 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 SMTNP53814 917 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 SLC12A3P55017 1021 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 MLLT6P55198 1093 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 CYP4F8P98187 520 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 FCHO2Q0JRZ9 810 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 NOLC1Q14978 699 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 LAPTM4AQ15012 233 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 ZBTB6Q15916 424 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 PLK5Q496M5 336 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 ARL6IP4Q66PJ3 421 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 ZNF280DQ6N043 979 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 RALGPS2Q86X27 583 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 TMC8Q8IU68 726 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 TTC9BQ8N6N2 239 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 APPL2Q8NEU8 664 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 GATA6Q92908 595 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 MYO19Q96H55 970 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 LOXL4Q96JB6 756 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 TSPAN18Q96SJ8 248 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 TCHPQ9BT92 498 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 LRRC3Q9BY71 257 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 DUSP15Q9H1R2 295 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 METTL5Q9NRN9 209 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 VPS45Q9NRW7 570 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 VTI1BQ9UEU0 232 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 AFF4Q9UHB7 1163 aaKnown RBP10.86□□□□□ -0.67
SCFD1-220ENST00000556486 KIF3AQ9Y496 699 aa10.86□□□□□ -0.67
SCFD1-220ENST00000556486 MYO16Q9Y6X6 1858 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 TTC26A0AVF1 554 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 LNP1A1A4G5 178 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 SOBPA7XYQ1 873 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 H0YCG3 227 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 SLC16A4O15374 487 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 CLDN3O15551 220 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 HYAL3O43820 417 aaPredicted RBP10.85□□□□□ -0.67
SCFD1-220ENST00000556486 FAM189A1O60320 539 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 EGFP01133 1207 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 PIGRP01833 764 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 CLTAP09496 248 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 CYP3A5P20815 502 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 CDC25AP30304 524 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 GBP1P32455 592 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 STRN3Q13033 797 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 KYAT1Q16773 422 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 TMEM119Q4V9L6 283 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 SEZ6Q53EL9 994 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 GPR158Q5T848 1215 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 TRIM68Q6AZZ1 485 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 FSTL4Q6MZW2 842 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 C19orf48Q6RUI8 117 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 DEFB124Q8NES8 71 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 RNF34Q969K3 372 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 AK8Q96MA6 479 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 TBC1D32Q96NH3 1257 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 PNMA5Q96PV4 448 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 CDK15Q96Q40 435 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 NIF3L1Q9GZT8 377 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 DNAJC25Q9H1X3 360 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 ATXN3LQ9H3M9 355 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 LARSQ9P2J5 1176 aaKnown RBP10.85□□□□□ -0.67
SCFD1-220ENST00000556486 KLK13Q9UKR3 277 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 ODF2LQ9ULJ1 636 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 ANK1P16157 1881 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 LAMA5O15230 3695 aa10.85□□□□□ -0.67
SCFD1-220ENST00000556486 BPTFQ12830 3046 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 OTOL1A6NHN0 477 aaPredicted RBP10.84□□□□□ -0.67
SCFD1-220ENST00000556486 CAVIN2O95810 425 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 PAX3P23760 479 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 BRD2P25440 801 aaKnown RBP10.84□□□□□ -0.67
SCFD1-220ENST00000556486 ZNF131P52739 623 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 NCKAP1LP55160 1127 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 FANCCQ00597 558 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 SPAG1Q07617 926 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 DUSP4Q13115 394 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 GAREM2Q75VX8 874 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 TTC16Q8NEE8 873 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 CHFRQ96EP1 664 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 MSANTD3Q96H12 275 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 ZBTB45Q96K62 511 aaPredicted RBP10.84□□□□□ -0.67
SCFD1-220ENST00000556486 SPATA32Q96LK8 384 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 TMEM209Q96SK2 561 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 TPSD1Q9BZJ3 242 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms