RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 SIM1P81133 766 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-213ENST00000554776 MRPS35P82673 323 aaKnown RBP3.79□□□□□ -1.8
SCFD1-213ENST00000554776 TRIM14Q14142 442 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 DHX8Q14562 1220 aaKnown RBP3.79□□□□□ -1.8
SCFD1-213ENST00000554776 ERCC6LQ2NKX8 1250 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 GRAMD1BQ3KR37 738 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 LONRF3Q496Y0 759 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 PRIMA1Q86XR5 153 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 FAM109AQ8N4B1 249 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 SIMC1Q8NDZ2 872 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 OR6B3Q8NGW1 331 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 ACTRT2Q8TDY3 377 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 POF1BQ8WVV4 589 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 LPIN2Q92539 896 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 PRDM13Q9H4Q3 707 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 LRIT1Q9P2V4 623 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 XPR1Q9UBH6 696 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 ZNHIT2Q9UHR6 403 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 PCDHGB2Q9Y5G2 931 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 RAD54BQ9Y620 910 aa3.79□□□□□ -1.8
SCFD1-213ENST00000554776 A0A0B4J269 797 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TRIM43BA6NCK2 446 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TMEM233B4DJY2 109 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 MGST3O14880 152 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 NBNO60934 754 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 NUDT3O95989 172 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 ATXN1LP0C7T5 689 aaKnown RBP3.78□□□□□ -1.8
SCFD1-213ENST00000554776 ITGALP20701 1170 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 RARRES1P49788 294 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 HNRNPMP52272 730 aaKnown RBP eCLIP3.78□□□□□ -1.81e-6■■■□□ 16.6
SCFD1-213ENST00000554776 WNT3P56703 355 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 LOXL3P58215 753 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 SLC13A2Q13183 592 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 CTBP1Q13363 440 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TUBB3Q13509 450 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 PTPRRQ15256 657 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 NBPF8Q3BBV2 869 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TUBB8Q3ZCM7 444 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 RBM20Q5T481 1227 aaKnown RBP3.78□□□□□ -1.8
SCFD1-213ENST00000554776 LMBRD2Q68DH5 695 aaPredicted RBP3.78□□□□□ -1.8
SCFD1-213ENST00000554776 ERAP2Q6P179 960 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 GGT6Q6P531 493 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TMEM108Q6UXF1 575 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 MICU3Q86XE3 530 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 DNAJC10Q8IXB1 793 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 OR2C3Q8N628 320 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 DNAJC5GQ8N7S2 189 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 ENAHQ8N8S7 591 aaPredicted RBP3.78□□□□□ -1.8
SCFD1-213ENST00000554776 DEPTORQ8TB45 409 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 MYCBPAPQ8TBZ2 947 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TRIM43Q96BQ3 446 aaPredicted RBP3.78□□□□□ -1.8
SCFD1-213ENST00000554776 SUCLG2Q96I99 432 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 PGBD1Q96JS3 809 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 MESP1Q9BRJ9 268 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 CRB3Q9BUF7 120 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TTYH3Q9C0H2 523 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 RIOX1Q9H6W3 641 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 CERS4Q9HA82 394 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 TMX2Q9Y320 296 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 INSL6Q9Y581 213 aa3.78□□□□□ -1.8
SCFD1-213ENST00000554776 WDR27A2RRH5 827 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 F5H697 171 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 OVOL3O00110 214 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 TRIAP1O43715 76 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 TCEA3O75764 348 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 PARP1P09874 1014 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 HARSP12081 509 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 TSHRP16473 764 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 LILRA4P59901 499 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 RPS16P62249 146 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 ITIH3Q06033 890 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 RAB32Q13637 225 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 PMS2P11Q13670 270 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 IQCB1Q15051 598 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 AMOTQ4VCS5 1084 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 VPS53Q5VIR6 699 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 STRIP1Q5VSL9 837 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 ANO1Q5XXA6 986 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 HIBCHQ6NVY1 386 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 CCDC174Q6PII3 467 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 GAS2L3Q86XJ1 694 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 MPP5Q8N3R9 675 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 SLC15A4Q8N697 577 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 FAM98AQ8NCA5 519 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 OR56A3Q8NH54 315 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 CAGE1Q8TC20 777 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 NMD3Q96D46 503 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 FBXL20Q96IG2 436 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 MSLNLQ96KJ4 702 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 CRAMP1Q96RY5 1269 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 ZNF518BQ9C0D4 1074 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 BTBD1Q9H0C5 482 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 AS3MTQ9HBK9 375 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 PNPLA8Q9NP80 782 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 COL20A1Q9P218 1284 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 AFF4Q9UHB7 1163 aaKnown RBP3.77□□□□□ -1.81
SCFD1-213ENST00000554776 TLK1Q9UKI8 766 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 TBC1D30Q9Y2I9 924 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 PAXBP1Q9Y5B6 917 aa3.77□□□□□ -1.81
SCFD1-213ENST00000554776 CCDC151A5D8V7 595 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms