RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 GPR15P49685 360 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 PDE6CP51160 858 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 CACNA2D1P54289 1103 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 TWF1Q12792 350 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 CCDC85BQ15834 202 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 CTC1Q2NKJ3 1217 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 PPM1LQ5SGD2 360 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 E4F1Q66K89 784 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 IRF2BP2Q7Z5L9 587 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 NOP9Q86U38 636 aaKnown RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 DRC7Q8IY82 874 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 ANKRD52Q8NB46 1076 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 EPS8L1Q8TE68 723 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 SYN2Q92777 582 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 PABPC5Q96DU9 382 aaKnown RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 DUSP16Q9BY84 665 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 TMEM30AQ9NV96 361 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 DZANK1Q9NVP4 752 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 CLDND1Q9NY35 253 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 NOCTQ9UK39 431 aaKnown RBP12.97□□□□□ -0.33
SHMT2-209ENST00000553949 YIPF1Q9Y548 306 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 ATG2AQ2TAZ0 1938 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 MYO9BQ13459 2157 aa12.97□□□□□ -0.33
SHMT2-209ENST00000553949 PRRC2BQ5JSZ5 2229 aaKnown RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 F8VP50 259 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 M0QYV0 167 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 TRIM66O15016 1216 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 MFAP3LO75121 409 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 RFPL2O75678 378 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 BEST1O76090 585 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 CFHP08603 1231 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 NPR3P17342 541 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 ATF6P18850 670 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SSTR3P32745 418 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 ALDH1A3P47895 512 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 MAP3K7CLP57077 242 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 RPL10AP62906 217 aaKnown RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 GOLGA8FQ08AF8 430 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 GOLGA8DPQ0D2H9 430 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 PLD1Q13393 1074 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 DDR2Q16832 855 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 TAF3Q5VWG9 929 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 ANKRD54Q6NXT1 300 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 CLEC20AQ6ZU45 233 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 TTC30AQ86WT1 665 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 ZNF677Q86XU0 584 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SCN4BQ8IWT1 228 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 C12orf76Q8N812 135 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 OR8K1Q8NGG5 319 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 UBA3Q8TBC4 463 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SLC20A1Q8WUM9 679 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 DDX1Q92499 740 aaKnown RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 C8orf48Q96LL4 319 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 KCNK16Q96T55 309 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 DNAJC7Q99615 494 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SMOQ99835 787 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 SFXN1Q9H9B4 322 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 CSNK1G1Q9HCP0 422 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 DMAP1Q9NPF5 467 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-209ENST00000553949 ZDHHC7Q9NXF8 308 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 CLEC1BQ9P126 229 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 HESX1Q9UBX0 185 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 PCDHGC3Q9UN70 934 aa12.96□□□□□ -0.33
SHMT2-209ENST00000553949 AKR1B15C9JRZ8 316 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 CCL16O15467 120 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 TBX10O75333 385 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 LRG1P02750 347 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 HNRNPA1P09651 372 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 HOXB8P17481 243 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 ANXA13P27216 316 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 HOXA9P31269 272 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 LTBRP36941 435 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 PRKCIP41743 596 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 BCAT1P54687 386 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 ADKP55263 362 aaKnown RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 SLC8A3P57103 927 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 CDR2Q01850 454 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 DLX2Q07687 328 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 BST2Q10589 180 aaKnown RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 ARID5BQ14865 1188 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 MEA1Q16626 185 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 PKDCCQ504Y2 493 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 SDHAF4Q5VUM1 108 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 DENND1BQ6P3S1 775 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 EP400NLQ6ZTU2 488 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 CNGA4Q8IV77 575 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 SPC24Q8NBT2 197 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 ZMIZ2Q8NF64 920 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 CMASQ8NFW8 434 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 GPR152Q8TDT2 470 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 GIPC2Q8TF65 315 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 PPM1EQ8WY54 764 aa12.95□□□□□ -0.34
SHMT2-209ENST00000553949 SECISBP2LQ93073 1101 aaKnown RBP12.95□□□□□ -0.34
SHMT2-209ENST00000553949 CCDC195A0A1B0GUA6 201 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 XPO1O14980 1071 aaKnown RBP12.94□□□□□ -0.34
SHMT2-209ENST00000553949 PAPLNO95428 1278 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 MMEP08473 750 aa12.94□□□□□ -0.34
SHMT2-209ENST00000553949 POU2F2P09086 479 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms