RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 SLCO2A1Q92959 643 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 CCDC77Q9BR77 488 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ZCWPW1Q9H0M4 648 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 VCX3BQ9H321 246 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 TMEM134Q9H6X4 195 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ZWILCHQ9H900 591 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 VCX3AQ9NNX9 186 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PHTF1Q9UMS5 762 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PHF24Q9UPV7 400 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 LRRC37A2A6NM11 1700 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 MAFO75444 373 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 CNMDO75829 334 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PENKP01210 267 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 RALAP11233 206 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF132P52740 706 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 BPIFB4P59827 614 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 KLF1Q13351 362 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ATP13A4Q4VNC1 1196 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 RHBDF2Q6PJF5 856 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PPFIBP2Q8ND30 876 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 SCG3Q8WXD2 468 aaKnown RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 LZICQ8WZA0 190 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PTPRN2Q92932 1015 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF668Q96K58 619 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 FAM81BQ96LP2 452 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PWWP2AQ96N64 755 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 DCLK3Q9C098 648 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 SPATC1LQ9H0A9 340 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 OTOFQ9HC10 1997 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 LNPEPQ9UIQ6 1025 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PPP2R3BQ9Y5P8 575 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 GMEB1Q9Y692 573 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 FAM47DPA6NHR8 397 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 ADM5C9JUS6 153 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 THAP12O43422 761 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 CDH16O75309 829 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 PGK2P07205 417 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 GJB1P08034 283 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 SLC1A1P43005 524 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 RPL7AP62424 266 aaKnown RBP12.85□□□□□ -0.35
SHMT2-207ENST00000553837 KPNB1Q14974 876 aaKnown RBP12.85□□□□□ -0.35
SHMT2-207ENST00000553837 HSDL1Q3SXM5 330 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 FOXB2Q5VYV0 432 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 PLEKHA7Q6IQ23 1121 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF449Q6P9G9 518 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 C4orf50Q6ZRC1 276 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 PRUNE1Q86TP1 453 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 PHF13Q86YI8 300 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-207ENST00000553837 SRRM1Q8IYB3 904 aaKnown RBP12.85□□□□□ -0.35
SHMT2-207ENST00000553837 LRRC71Q8N4P6 559 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 MTMR12Q9C0I1 747 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 SAR1AQ9NR31 198 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 NAALADL1Q9UQQ1 740 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 NEU2Q9Y3R4 380 aa12.85□□□□□ -0.35
SHMT2-207ENST00000553837 RBM47A0AV96 593 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 FOXO6A8MYZ6 492 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TJP3O95049 919 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ITGBL1O95965 494 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 LDHAP00338 332 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 SRGAP2CP0DJJ0 459 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 CD58P19256 250 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 MYL6P60660 151 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 MOGSQ13724 837 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 MYBPC3Q14896 1274 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 KHDC1Q4VXA5 237 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GADL1Q6ZQY3 521 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 BRSK2Q8IWQ3 736 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 CYP4X1Q8N118 509 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 PHC3Q8NDX5 983 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF606Q8WXB4 792 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GATA6Q92908 595 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TRIM11Q96F44 468 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TXNRD2Q9NNW7 524 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 NRBP2Q9NSY0 501 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 DNAJC17Q9NVM6 304 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 KLHL11Q9NVR0 708 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 USTQ9Y2C2 406 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ASS1P00966 412 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GSTT1P30711 240 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GJC1P36383 396 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 SESN3P58005 492 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 CAV1Q03135 178 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 SLC34A1Q06495 639 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF252P-AS1Q0IIN9 211 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 LAMTOR4Q0VGL1 99 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 KYNUQ16719 465 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GSTA3Q16772 222 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 RGS9BPQ6ZS82 235 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ZC3H18Q86VM9 953 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 LCA5Q86VQ0 697 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 GPC2Q8N158 579 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TRAPPC12Q8WVT3 735 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 SEPT1Q8WYJ6 367 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 OPTNQ96CV9 577 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 CLMNQ96JQ2 1002 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 ACO2Q99798 780 aaKnown RBP12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TUBB6Q9BUF5 446 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 SLC4A7Q9Y6M7 1214 aa12.84□□□□□ -0.35
SHMT2-207ENST00000553837 TLR3O15455 904 aaKnown RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 VPS41P49754 854 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms