RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FAM105AQ9NUU6 356 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 ATP8A1Q9Y2Q0 1164 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 HES2Q9Y543 173 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 PCDHB2Q9Y5E7 798 aa8.09□□□□□ -1.11
LIMA1-216ENST00000552909 O00370 1275 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RGS16O15492 202 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 MAP3K13O43283 966 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 NUDT17P0C025 328 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ACADSP16219 412 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SP100P23497 879 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 MAGEA8P43361 318 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 NAMPTP43490 491 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 NPTX2P47972 431 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 IFNAR2P48551 515 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RAD23BP54727 409 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 POLE2P56282 527 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CCDC85BQ15834 202 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 HGSNATQ68CP4 663 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SFR1Q86XK3 245 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RBM12BQ8IXT5 1001 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM192Q8IY95 271 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SMG8Q8ND04 991 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ATL2Q8NHH9 583 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 HELQQ8TDG4 1101 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 KIFAP3Q92845 792 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CLP1Q92989 425 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TRAPPC9Q96Q05 1148 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RPS6KC1Q96S38 1066 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 FMO2Q99518 471 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TRAIPQ9BWF2 469 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 AP1M1Q9BXS5 423 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 EDEM3Q9BZQ6 932 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CCDC113Q9H0I3 377 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ZCWPW1Q9H0M4 648 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RNF39Q9H2S5 420 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SLITRK6Q9H5Y7 841 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ELAC1Q9H777 363 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RNPEPL1Q9HAU8 725 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TYW1Q9NV66 732 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CTNNAL1Q9UBT7 734 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 G3BP2Q9UN86 482 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 UTP11Q9Y3A2 253 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 KIAA1671Q9BY89 1806 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 A0A1B0GVG6 124 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 KRIT1O00522 736 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CREB3O43889 395 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ZNF623O75123 536 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 EOMESO95936 686 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 AGTP01019 485 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SHBGP04278 402 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SERPING1P05155 500 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CALB2P22676 271 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 BMPR1AP36894 532 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 PBX3P40426 434 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SKIV2L2P42285 1042 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 LMNB2Q03252 620 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 MAN2A1Q16706 1144 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 COBLL1Q53SF7 1204 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 AGMOQ6ZNB7 445 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TAS1R3Q7RTX0 852 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CROCCP2Q86T23 111 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 NELFCDQ8IXH7 590 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 GUF1Q8N442 669 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 FBXO22Q8NEZ5 403 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 DEPTORQ8TB45 409 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 MAIP1Q8WWC4 291 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 SEC14L1Q92503 715 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 GAS2L1Q99501 681 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 STMN4Q9H169 189 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 DPH5Q9H2P9 285 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 CWH43Q9H720 699 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 RXFP1Q9HBX9 757 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ALG13Q9NP73 1137 aaKnown RBP8.08□□□□□ -1.12
LIMA1-216ENST00000552909 KCND2Q9NZV8 630 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 AMACRQ9UHK6 382 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 ARL2BPQ9Y2Y0 163 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 MTCH2Q9Y6C9 303 aa8.08□□□□□ -1.12
LIMA1-216ENST00000552909 TLDC2A0PJX2 215 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SLC16A4O15374 487 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TTI1O43156 1089 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TRIOO75962 3097 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CSPG5O95196 566 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PRKCBP05771 671 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CCNB1P14635 433 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GAP43P17677 238 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CTNNB1P35222 781 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CASP5P51878 434 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 COL4A4P53420 1690 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 USP4Q13107 963 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 MAPK6Q16659 721 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SFMBT2Q5VUG0 894 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 DENND2CQ68D51 928 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CENPPQ6IPU0 288 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 NOTUMQ6P988 496 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 ZBTB8OSQ8IWT0 167 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CMTR2Q8IYT2 770 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 MAFAQ8NHW3 353 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 STK32AQ8WU08 396 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SCFD1Q8WVM8 642 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms