RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 RHOP08100 348 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 CD19P15391 556 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 ANXA13P27216 316 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 PABPC1LQ4VXU2 614 aaKnown RBP17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 CYP4A22Q5TCH4 519 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 PAQR9Q6ZVX9 377 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 HS6ST3Q8IZP7 471 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 RBBP8NLQ8NC74 664 aaPredicted RBP17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 PSMG2Q969U7 264 aa17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 PCMTD1Q96MG8 357 aaPredicted RBP17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 HNRNPABQ99729 332 aaKnown RBP17.23■□□□□ 0.35
CHMP1A-209ENST00000550872 RNF225M0QZC1 329 aaPredicted RBP17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 TRIM66O15016 1216 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 AP1G2O75843 785 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 CSH1P0DML2 217 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 CSH2P0DML3 217 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 MYL4P12829 197 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 KRT5P13647 590 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 FSHRP23945 695 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 SYCP1Q15431 976 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 SGO2Q562F6 1265 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 PPP1R26Q5T8A7 1209 aaPredicted RBP17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 KLHDC7AQ5VTJ3 777 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 DPY19L2P1Q6NXN4 242 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 SMARCD1Q96GM5 515 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 RPGRIP1Q96KN7 1286 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 C8orf48Q96LL4 319 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 ASAH2Q9NR71 780 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 KRT82Q9NSB4 513 aa17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 MRPS23Q9Y3D9 190 aaKnown RBP17.22■□□□□ 0.35
CHMP1A-209ENST00000550872 SLC38A8A6NNN8 435 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 F8VP50 259 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 ZNF197O14709 1029 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 PAEPP09466 180 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 VDRP11473 427 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 SP100P23497 879 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 USP8P40818 1118 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 KLK7P49862 253 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 CACNA2D1P54289 1103 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 FANCCQ00597 558 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 ARHGAP17Q68EM7 881 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 PDZD4Q76G19 769 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 LEMD2Q8NC56 503 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 RNF214Q8ND24 703 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 STKLD1Q8NE28 680 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 SPATA17Q96L03 361 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 NAP1L5Q96NT1 182 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 ERGIC2Q96RQ1 377 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 DMAP1Q9NPF5 467 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 PLCB1Q9NQ66 1216 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 RTN4Q9NQC3 1192 aaKnown RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 AVENQ9NQS1 362 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 TMEM30AQ9NV96 361 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 PRKAG3Q9UGI9 489 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 KIAA1257Q9ULG3 409 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 MAGED2Q9UNF1 606 aaPredicted RBP17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 CNTN6Q9UQ52 1028 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 SIK3Q9Y2K2 1263 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 PTPRDP23468 1912 aa17.21■□□□□ 0.35
CHMP1A-209ENST00000550872 MYH10P35580 1976 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 TEX33O43247 280 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 FAM200BP0CF97 657 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 UCHL3P15374 230 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 COL9A1P20849 921 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 GBP2P32456 591 aaPredicted RBP17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 MTMR3Q13615 1198 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 RAPGEF1Q13905 1077 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 GET4Q7L5D6 327 aaPredicted RBP17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 OTOP3Q7RTS5 596 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 ADHFE1Q8IWW8 467 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 ITFG1Q8TB96 612 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 SHC3Q92529 594 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 KCNK16Q96T55 309 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 SMOQ99835 787 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 LRRC3Q9BY71 257 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 ZNF334Q9HCZ1 680 aaPredicted RBP17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 FAM207AQ9NSI2 230 aaPredicted RBP17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 AJAP1Q9UKB5 411 aaPredicted RBP17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 NR2E1Q9Y466 385 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 FHOD1Q9Y613 1164 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 NOTCH4Q99466 2003 aa17.2■□□□□ 0.34
CHMP1A-209ENST00000550872 A0A1B0GTH6 734 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 FOXN3O00409 490 aaPredicted RBP17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 BEST1O76090 585 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 HMGA1P17096 107 aaKnown RBP17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 RFX1P22670 979 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 CCR2P41597 374 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 ZNF132P52740 706 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 EPHA5P54756 1037 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 MAP3K7CLP57077 242 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 DRAP1Q14919 205 aaPredicted RBP17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 SLC5A9Q2M3M2 681 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 TMC8Q8IU68 726 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 NEK11Q8NG66 645 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 ING5Q8WYH8 240 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 TFAP2BQ92481 460 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 ACSF2Q96CM8 615 aaPredicted RBP17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 TCEAL4Q96EI5 215 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 CEP295NLQ96MC4 621 aa17.19■□□□□ 0.34
CHMP1A-209ENST00000550872 DUSP16Q9BY84 665 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms