RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 GAP43P17677 238 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 PDCP20941 246 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 DDX6P26196 483 aaKnown RBP eCLIP8.21□□□□□ -1.1
NEK3-201ENST00000550331 PMLP29590 882 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 ADSSP30520 456 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 HOXA6P31267 233 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 TXLNAP40222 546 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 SOX9P48436 509 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 CCINQ13939 588 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 SIM2Q14190 667 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 PTPAQ15257 358 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 TAF12Q16514 161 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 NFE2Q16621 373 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 WDR44Q5JSH3 913 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 WSCD1Q658N2 575 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 TXNDC11Q6PKC3 985 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 CRELD2Q6UXH1 353 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 LRRTM3Q86VH5 581 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 LONP2Q86WA8 852 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 EFCAB13Q8IY85 973 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 DCP1BQ8IZD4 617 aaKnown RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 LEO1Q8WVC0 666 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 NANOS1Q8WY41 292 aaKnown RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 EPSTI1Q96J88 318 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 ZFYVE19Q96K21 471 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 LPIN3Q9BQK8 851 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 SLC46A2Q9BY10 475 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 MRPL44Q9H9J2 332 aaKnown RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 KIF9Q9HAQ2 790 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 OLFML3Q9NRN5 406 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 THG1LQ9NWX6 298 aaKnown RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 ABI2Q9NYB9 513 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 GTSE1Q9NYZ3 720 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 FBXO2Q9UK22 296 aaPredicted RBP8.21□□□□□ -1.1
NEK3-201ENST00000550331 PCDHB5Q9Y5E4 795 aa8.21□□□□□ -1.1
NEK3-201ENST00000550331 PKD1L2Q7Z442 2459 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 VPS37CA5D8V6 355 aaPredicted RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 MYMKA6NI61 221 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 FOXD2O60548 495 aaPredicted RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 LDHAP00338 332 aaKnown RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 ITGB2P05107 769 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 HMGA1P17096 107 aaKnown RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 GARTP22102 1010 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 AVPR1AP37288 418 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 NLRP12P59046 1061 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 SH3BP2P78314 561 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 CYP4F8P98187 520 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 TSPY1Q01534 308 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 CUL4AQ13619 759 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ALCAMQ13740 583 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ACAP1Q15027 740 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 PON2Q15165 354 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ITPRIPL2Q3MIP1 535 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 L1TD1Q5T7N2 865 aaKnown RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 N4BP2L1Q5TBK1 243 aaPredicted RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 RRAGBQ5VZM2 374 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 CCDC73Q6ZRK6 1079 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 Q6ZS52 159 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 USP49Q70CQ1 688 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 DYMQ7RTS9 669 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 BRSK2Q8IWQ3 736 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 CMTM8Q8IZV2 173 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 TMEM86AQ8N2M4 240 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 LRRC52Q8N7C0 313 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 SPATA18Q8TC71 538 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 DNAJC19Q96DA6 116 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ACCSQ96QU6 501 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 FAM83CQ9BQN1 747 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ACBD6Q9BR61 282 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 FAM213AQ9BRX8 229 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 ABCB6Q9NP58 842 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 RBM12Q9NTZ6 932 aaKnown RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 SRPRBQ9Y5M8 271 aaKnown RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 MORC2Q9Y6X9 1032 aaPredicted RBP8.2□□□□□ -1.1
NEK3-201ENST00000550331 IGF2RP11717 2491 aa8.2□□□□□ -1.1
NEK3-201ENST00000550331 TSC2P49815 1807 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CCDC163A0A0D9SF12 145 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 FRMD3A2A2Y4 597 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CHURC1-FNTBB4DL54 471 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 KIAA0391O15091 583 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 NOL4O94818 638 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 GCNT3O95395 438 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 F11P03951 625 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 ITGB3P05106 788 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 PROS1P07225 676 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CSH1P0DML2 217 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CSH2P0DML3 217 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 POLR2BP30876 1174 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 FNTBP49356 437 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 SHC2P98077 582 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TFAMQ00059 246 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 AMPD2Q01433 879 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TNK2Q07912 1038 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 KCNA1Q09470 495 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 BFSP1Q12934 665 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 SRSF5Q13243 272 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 RUNX3Q13761 415 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 ZNF268Q14587 947 aaPredicted RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 AASDHQ4L235 1098 aaPredicted RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms