RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GCSHP23434 173 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 EEF1GP26641 437 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 ZFP36P26651 326 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 CTGFP29279 349 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 ELLP55199 621 aaPredicted RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 GRM1Q13255 1194 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 METRNLQ641Q3 311 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 TAPT1Q6NXT6 567 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 PPP1R32Q7Z5V6 425 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 SPSB4Q96A44 273 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 LRIG1Q96JA1 1093 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 ZC3H10Q96K80 434 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 SLC46A1Q96NT5 459 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 TRIB1Q96RU8 372 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 SPATA5L1Q9BVQ7 753 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 WDR11Q9BZH6 1224 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 REXO4Q9GZR2 422 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 SIK2Q9H0K1 926 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 ZNF768Q9H5H4 540 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 ANKFY1Q9P2R3 1169 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 HSFX1Q9UBD0 423 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 HESX1Q9UBX0 185 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 TESQ9UGI8 421 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 EIF2B4Q9UI10 523 aaKnown RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 RAB27BO00194 218 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 ADAMTS3O15072 1205 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 LPXNO60711 386 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 NDST3O95803 873 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 C1RP00736 705 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 TXNP10599 105 aaKnown RBP4.93□□□□□ -1.62
VPS29-205ENST00000548539 ITGA8P53708 1063 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 HSD11B2P80365 405 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 KRT72Q14CN4 511 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 PUM3Q15397 648 aaKnown RBP4.93□□□□□ -1.62
VPS29-205ENST00000548539 C4orf46Q504U0 113 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 PRR16Q569H4 304 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 METTL24Q5JXM2 366 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 FAM102AQ5T9C2 384 aaPredicted RBP4.93□□□□□ -1.62
VPS29-205ENST00000548539 AGAP9Q5VTM2 703 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 SP5Q6BEB4 398 aaPredicted RBP4.93□□□□□ -1.62
VPS29-205ENST00000548539 MYCT1Q8N699 235 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 ZNF527Q8NB42 609 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 PSD4Q8NDX1 1056 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 OR56A1Q8NGH5 318 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 CAVIN3Q969G5 261 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 MUL1Q969V5 352 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 TMEM41AQ96HV5 264 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 PNKPQ96T60 521 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 TTLL2Q9BWV7 592 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 SLC46A2Q9BY10 475 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 TEX101Q9BY14 249 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 SMOC2Q9H3U7 446 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 ETAA1Q9NY74 926 aa4.93□□□□□ -1.62
VPS29-205ENST00000548539 FAM234BA2RU67 622 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 H7C4K7 107 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 DCLK1O15075 740 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 PLA2G6O60733 806 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ERN1O75460 977 aaKnown RBP4.92□□□□□ -1.62
VPS29-205ENST00000548539 FGFR4P22455 802 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 IL1R2P27930 398 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ALDH9A1P49189 494 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 TOB1P50616 345 aaPredicted RBP4.92□□□□□ -1.62
VPS29-205ENST00000548539 LILRA4P59901 499 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 MC2RQ01718 297 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ICA1Q05084 483 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 PIGFQ07326 219 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ZNF844Q08AG5 666 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 CCDC38Q502W7 563 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 PDCD4Q53EL6 469 aaKnown RBP4.92□□□□□ -1.62
VPS29-205ENST00000548539 PLA1AQ53H76 456 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 TAF2Q6P1X5 1199 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 FBXO38Q6PIJ6 1188 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 BEND5Q7L4P6 421 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ZNF280BQ86YH2 543 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 RHOT2Q8IXI1 618 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 YAF2Q8IY57 180 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 BOLLQ8N9W6 283 aaKnown RBP4.92□□□□□ -1.62
VPS29-205ENST00000548539 FANCBQ8NB91 859 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 MYRIPQ8NFW9 859 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 HERPUD2Q9BSE4 406 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 TRPM5Q9NZQ8 1165 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 SLC39A10Q9ULF5 831 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 ATP11BQ9Y2G3 1177 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 PAXBP1Q9Y5B6 917 aa4.92□□□□□ -1.62
VPS29-205ENST00000548539 A0A1B0GTW7 788 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 CCDC195A0A1B0GUA6 201 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 CCDC189A1A4V9 331 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 MYADML2A6NDP7 307 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 PODXLO00592 558 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 TOR1BO14657 336 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 FFAR2O15552 330 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 GPANK1O95872 356 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 SPATA31D3P0C874 917 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 ACVR2AP27037 513 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 PTH2RP49190 550 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 RGS19P49795 217 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 ZNF134P52741 427 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 OCA2Q04671 838 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 KRT17Q04695 432 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms