RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	C3orf58	Q8NDZ4	430 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	KBTBD7	Q8WVZ9	684 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ZNF606	Q8WXB4	792 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ELMO3	Q96BJ8	720 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	TRIM11	Q96F44	468 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	RIPOR3	Q96MK2	946 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	NOX5	Q96PH1	765 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ACBD6	Q9BR61	282 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	SYT11	Q9BT88	431 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	TSGA10	Q9BZW7	698 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ELOVL4	Q9GZR5	314 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	LHX5	Q9H2C1	402 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	CWH43	Q9H720	699 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	KCND1	Q9NSA2	647 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	DDX43	Q9NXZ2	648 aa	Known RBP	10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	HESX1	Q9UBX0	185 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	NAGPA	Q9UK23	515 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	ADGRG1	Q9Y653	693 aa		10.09	□□□□□ -0.79
YBX3-215	ENST00000544504	RIF1	Q5UIP0	2472 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504		A0A087X0T9	212 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	KRT86	O43790	486 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	RTN2	O75298	545 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	OAZ2	O95190	189 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CSPG5	O95196	566 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	MME	P08473	750 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	PLEK	P08567	350 aa	Predicted RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	H2AFZ	P0C0S5	128 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	FAM228B	P0C875	321 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SETSIP	P0DME0	302 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	PTPN1	P18031	435 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	FGFR3	P22607	806 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	MAGEA1	P43355	309 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	BRCC3	P46736	316 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CREM	Q03060	361 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SMARCB1	Q12824	385 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	KIF5A	Q12840	1032 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CLEC16A	Q2KHT3	1053 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	USP41	Q3LFD5	358 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CCDC122	Q5T0U0	273 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	FAM171A1	Q5VUB5	890 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	ARHGAP17	Q68EM7	881 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	ZNF280D	Q6N043	979 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	LCLAT1	Q6UWP7	414 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CD300LG	Q6UXG3	332 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	ZNF662	Q6ZS27	426 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	H2AFV	Q71UI9	128 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	DCP1B	Q8IZD4	617 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SLC39A11	Q8N1S5	342 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	COLGALT1	Q8NBJ5	622 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	B3GALNT2	Q8NCR0	500 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SLC30A5	Q8TAD4	765 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	KIAA1524	Q8TCG1	905 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	WHAMM	Q8TF30	809 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	HASPIN	Q8TF76	798 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	DDX1	Q92499	740 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	IGSF21	Q96ID5	467 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	VCPIP1	Q96JH7	1222 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	CALR3	Q96L12	384 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SYT15	Q9BQS2	421 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	SSX2IP	Q9Y2D8	614 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	MRPL42	Q9Y6G3	142 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-215	ENST00000544504	PLXNA3	P51805	1871 aa		10.08	□□□□□ -0.8
YBX3-215	ENST00000544504		O00370	1275 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	DDX3X	O00571	662 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	B4GALT3	O60512	393 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	PDGFB	P01127	241 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	TUBB4A	P04350	444 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	PDGFRB	P09619	1106 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	MYBL1	P10243	752 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	BRD2	P25440	801 aa	Known RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	CDH5	P33151	784 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	NSF	P46459	744 aa	Known RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	NRIP1	P48552	1158 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	VAV2	P52735	878 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	BCAT1	P54687	386 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	FMO1	Q01740	532 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	GFPT1	Q06210	699 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	MTF1	Q14872	753 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	NFE2	Q16621	373 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	IFI16	Q16666	785 aa	Known RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	ARHGAP29	Q52LW3	1261 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	INTS6L	Q5JSJ4	861 aa	Known RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	TAF3	Q5VWG9	929 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	KIAA1841	Q6NSI8	718 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	C4orf50	Q6ZRC1	276 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	DDX53	Q86TM3	631 aa	Known RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	ACOT1	Q86TX2	421 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	TMEM130	Q8N3G9	435 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	SLC20A1	Q8WUM9	679 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	RABGGTA	Q92696	567 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	CYFIP2	Q96F07	1278 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	TTPAL	Q9BTX7	342 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	HERC2P3	Q9BVR0	1158 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	ISCU	Q9H1K1	167 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	SPTLC3	Q9NUV7	552 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	MARCH5	Q9NX47	278 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	CACNG4	Q9UBN1	327 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	PYCARD	Q9ULZ3	195 aa		10.07	□□□□□ -0.8
YBX3-215	ENST00000544504	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	10.07	□□□□□ -0.8

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