RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	CNP	P09543	421 aa	Known RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	IRS1	P35568	1242 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	CDR1	P51861	262 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	RAB33A	Q14088	237 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	SPA17	Q15506	151 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	CFAP221	Q4G0U5	840 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	VSTM1	Q6UX27	236 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	RSPO2	Q6UXX9	243 aa	Predicted RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	CCDC149	Q6ZUS6	474 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	LRRTM3	Q86VH5	581 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	FUK	Q8N0W3	1084 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	TXLNB	Q8N3L3	684 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	ANKRD52	Q8NB46	1076 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	C1orf131	Q8NDD1	294 aa	Known RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	ZNF461	Q8TAF7	563 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	UBA3	Q8TBC4	463 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	DDX1	Q92499	740 aa	Known RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	SECISBP2L	Q93073	1101 aa	Known RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	MRPL38	Q96DV4	380 aa	Known RBP	12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	PKMYT1	Q99640	499 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	DUSP16	Q9BY84	665 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	ZNF518B	Q9C0D4	1074 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	MIS12	Q9H081	205 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	CYP4F11	Q9HBI6	524 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	ST7	Q9NRC1	585 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	TMLHE	Q9NVH6	421 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	ADAMTS1	Q9UHI8	967 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	MAFF	Q9ULX9	164 aa		12.58	□□□□□ -0.4
DDB1-223	ENST00000543658	EPOP	A6NHQ4	379 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	HIDE1	A8MVS5	230 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	TMCO5B	A8MYB1	307 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	XPO1	O14980	1071 aa	Known RBP	12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	ADAM12	O43184	909 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	LILRB3	O75022	631 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	SRGAP2B	P0DMP2	458 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	ATF2	P15336	505 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	FECH	P22830	423 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	MAGEA11	P43364	429 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	ACADSB	P45954	432 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	ALDH1A3	P47895	512 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	TUFM	P49411	452 aa	Known RBP	12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	MAP3K7CL	P57077	242 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	RPL10A	P62906	217 aa	Known RBP	12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	PLD1	Q13393	1074 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	VEPH1	Q14D04	833 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	SLC18A3	Q16572	532 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	CCDC142	Q17RM4	750 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	CLEC16A	Q2KHT3	1053 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	CCDC122	Q5T0U0	273 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	NAA35	Q5VZE5	725 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	DENND1B	Q6P3S1	775 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	ATAD1	Q8NBU5	361 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	TRIM11	Q96F44	468 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	GAS2L1	Q99501	681 aa	Predicted RBP	12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	LHX5	Q9H2C1	402 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	LRRC4	Q9HBW1	653 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	HSFX1	Q9UBD0	423 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	PCDHGC5	Q9Y5F6	944 aa		12.57	□□□□□ -0.4
DDB1-223	ENST00000543658	RFXAP	O00287	272 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	DDX3X	O00571	662 aa	Known RBP eCLIP	12.56	□□□□□ -0.4	2e-22	■■■■□ 23.7
DDB1-223	ENST00000543658	NDUFA10	O95299	355 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	SLC34A2	O95436	690 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	LRG1	P02750	347 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	CYP1A1	P04798	512 aa	Predicted RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	HAPLN1	P10915	354 aa	Predicted RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	CHRNB2	P17787	502 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	CYP2F1	P24903	491 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	NOMO3	P69849	1222 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	KRT83	P78385	493 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	GFPT1	Q06210	699 aa	Predicted RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	PDE4C	Q08493	712 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	DUSP4	Q13115	394 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	TAF12	Q16514	161 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	ALKBH5	Q6P6C2	394 aa	Known RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	CLEC20A	Q6ZU45	233 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	RBM23	Q86U06	439 aa	Known RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	TTC30A	Q86WT1	665 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	ERICH1	Q86X53	443 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	SIX6OS1	Q8N1H7	587 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	ELMOD1	Q8N336	334 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	CDCA3	Q99618	268 aa	Predicted RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	ZSWIM1	Q9BR11	485 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	RHOBTB2	Q9BYZ6	727 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	PRDM12	Q9H4Q4	367 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	NSUN3	Q9H649	340 aa	Known RBP	12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	TLE6	Q9H808	572 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	SPTLC3	Q9NUV7	552 aa		12.56	□□□□□ -0.4
DDB1-223	ENST00000543658	TRIOBP	Q9H2D6	2365 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658		A0A087X0T9	212 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	EIF3CL	B5ME19	914 aa	Known RBP	12.55	□□□□□ -0.4
DDB1-223	ENST00000543658		F8VP50	259 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	TGM5	O43548	720 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	CLASP2	O75122	1294 aa	Known RBP	12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	RTN2	O75298	545 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	ABLIM3	O94929	683 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	CALB1	P05937	261 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	CFH	P08603	1231 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	FAM228B	P0C875	321 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	GZMA	P12544	262 aa		12.55	□□□□□ -0.4
DDB1-223	ENST00000543658	CDH5	P33151	784 aa	Predicted RBP	12.55	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms