RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 DENND4CQ5VZ89 1909 aa14.02□□□□□ -0.16
RTN3-213ENST00000543552 TGFB1I1O43294 461 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 EXOC3O60645 756 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 TACC1O75410 805 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 STAU1O95793 577 aaKnown RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 SLFN14P0C7P3 912 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 HOXA6P31267 233 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 ATICP31939 592 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 GRIK1P39086 918 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 PPP3CCP48454 512 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 AP3M2P53677 418 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 PSMC1P62191 440 aaKnown RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 CYP27A1Q02318 531 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 MTF1Q14872 753 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 KNOP1Q1ED39 458 aaKnown RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 SDHAF4Q5VUM1 108 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 LONP2Q86WA8 852 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 DCLK2Q8N568 766 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 RDH13Q8NBN7 331 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 MYCBPAPQ8TBZ2 947 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 ATP2A3Q93084 1043 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 SYAP1Q96A49 352 aaPredicted RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 BLZF1Q9H2G9 400 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 RBM12Q9NTZ6 932 aaKnown RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 EXOC1Q9NV70 894 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 USP25Q9UHP3 1055 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 CCL26Q9Y258 94 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 CEP250Q9BV73 2442 aa14.02□□□□□ -0.17
RTN3-213ENST00000543552 ZNF638Q14966 1978 aaKnown RBP14.02□□□□□ -0.17
RTN3-213ENST00000543552 OBSL1O75147 1896 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 ATP8B3O60423 1300 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 PRR5-ARHGAP8B1AHC4 643 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 CLIC2O15247 247 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 LRP3O75074 770 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 PHACTR2O75167 634 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 CLSTN1O94985 981 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 MYL1P05976 194 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 DRD1P21728 446 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 GNL1P36915 607 aaPredicted RBP14.01□□□□□ -0.17
RTN3-213ENST00000543552 AFMP43652 599 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 IFNAR2P48551 515 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 ARHGAP8P85298 464 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 GAS6Q14393 721 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 WDR72Q3MJ13 1102 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 TMEM196Q5HYL7 178 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 PRR23BQ6ZRT6 265 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 Q6ZS52 159 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 DENND5BQ6ZUT9 1274 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 DGLUCYQ7Z3D6 616 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 STKLD1Q8NE28 680 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 CCDC26Q8TAB7 109 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 RMDN1Q96DB5 314 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 ELOVL4Q9GZR5 314 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 EBF3Q9H4W6 596 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 SLC39A2Q9NP94 309 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 TRPM5Q9NZQ8 1165 aa14.01□□□□□ -0.17
RTN3-213ENST00000543552 TRDMT1O14717 391 aaKnown RBP14□□□□□ -0.17
RTN3-213ENST00000543552 HCRTO43612 131 aa14□□□□□ -0.17
RTN3-213ENST00000543552 FOXD2O60548 495 aaPredicted RBP14□□□□□ -0.17
RTN3-213ENST00000543552 ATP2C2O75185 946 aa14□□□□□ -0.17
RTN3-213ENST00000543552 TADA3O75528 432 aa14□□□□□ -0.17
RTN3-213ENST00000543552 KIF20AO95235 890 aa14□□□□□ -0.17
RTN3-213ENST00000543552 PDGFRBP09619 1106 aa14□□□□□ -0.17
RTN3-213ENST00000543552 BDNFP23560 247 aa14□□□□□ -0.17
RTN3-213ENST00000543552 LMO2P25791 158 aa14□□□□□ -0.17
RTN3-213ENST00000543552 NOP14P78316 857 aaKnown RBP14□□□□□ -0.17
RTN3-213ENST00000543552 USP4Q13107 963 aa14□□□□□ -0.17
RTN3-213ENST00000543552 NR1H3Q13133 447 aa14□□□□□ -0.17
RTN3-213ENST00000543552 PSMD2Q13200 908 aa14□□□□□ -0.17
RTN3-213ENST00000543552 BIRC3Q13489 604 aa14□□□□□ -0.17
RTN3-213ENST00000543552 CUL4BQ13620 913 aa14□□□□□ -0.17
RTN3-213ENST00000543552 SIM2Q14190 667 aaPredicted RBP14□□□□□ -0.17
RTN3-213ENST00000543552 ZNF77Q15935 545 aa14□□□□□ -0.17
RTN3-213ENST00000543552 FBXO43Q4G163 708 aa14□□□□□ -0.17
RTN3-213ENST00000543552 MDH1BQ5I0G3 518 aa14□□□□□ -0.17
RTN3-213ENST00000543552 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14□□□□□ -0.17
RTN3-213ENST00000543552 TTC16Q8NEE8 873 aa14□□□□□ -0.17
RTN3-213ENST00000543552 OR6B3Q8NGW1 331 aa14□□□□□ -0.17
RTN3-213ENST00000543552 OSCP1Q8WVF1 389 aa14□□□□□ -0.17
RTN3-213ENST00000543552 CCDC47Q96A33 483 aaKnown RBP14□□□□□ -0.17
RTN3-213ENST00000543552 PCED1BQ96HM7 432 aa14□□□□□ -0.17
RTN3-213ENST00000543552 C8orf48Q96LL4 319 aa14□□□□□ -0.17
RTN3-213ENST00000543552 CRTAC1Q9NQ79 661 aa14□□□□□ -0.17
RTN3-213ENST00000543552 HPS4Q9NQG7 708 aa14□□□□□ -0.17
RTN3-213ENST00000543552 DUS2Q9NX74 493 aaKnown RBP14□□□□□ -0.17
RTN3-213ENST00000543552 RCOR1Q9UKL0 485 aa14□□□□□ -0.17
RTN3-213ENST00000543552 USP18Q9UMW8 372 aa14□□□□□ -0.17
RTN3-213ENST00000543552 ARHGAP26Q9UNA1 814 aa14□□□□□ -0.17
RTN3-213ENST00000543552 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.99□□□□□ -0.17
RTN3-213ENST00000543552 A8MXQ7 604 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 CHURC1-FNTBB4DL54 471 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 K7ESF4 209 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 NFATC1O95644 943 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 RETP07949 1114 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 P4HA1P13674 534 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 TCF3P15923 654 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 HDCP19113 662 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 TRIM21P19474 475 aaKnown RBP13.99□□□□□ -0.17
RTN3-213ENST00000543552 CASP1P29466 404 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 FNTBP49356 437 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms