RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CEP63Q96MT8 703 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 FERMT1Q9BQL6 677 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 DCP1AQ9NPI6 582 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 PPM1HQ9ULR3 514 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 TTLL13PA6NNM8 815 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 TNFRSF10AO00220 468 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 PRPF4O43172 522 aaKnown RBP eCLIP11.36□□□□□ -0.592e-11■■■□□ 18.4
CLSTN3-207ENST00000537408 MARVELD2Q8N4S9 558 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 SPOCK2Q92563 424 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 PRPF18Q99633 342 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 SLC39A3Q9BRY0 314 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 TLL2Q9Y6L7 1015 aa11.36□□□□□ -0.59
CLSTN3-207ENST00000537408 DDAH1O94760 285 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 FDFT1P37268 417 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 HSPA13P48723 471 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 RASA2Q15283 850 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 RGS21Q2M5E4 152 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 IL23RQ5VWK5 629 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CENPSQ8N2Z9 138 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CFAP57Q96MR6 1250 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TUT1Q9H6E5 874 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NEU2Q9Y3R4 380 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 FRMPD4Q14CM0 1322 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ENO1P06733 434 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ALAS1P13196 640 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CPA2P48052 419 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CDK8P49336 464 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 IGBP1P78318 339 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 FKBP3Q00688 224 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ACAP1Q15027 740 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TRIM16LQ309B1 348 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 LPCAT4Q643R3 524 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 DCDC5Q6ZRR9 648 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 C14orf80Q86SX3 495 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 BBOF1Q8ND07 529 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NKX2-3Q8TAU0 364 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 LPAR1Q92633 364 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 OLFM1Q99784 485 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NUDT12Q9BQG2 462 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 HOMER2Q9NSB8 354 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NR2E1Q9Y466 385 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NOX1Q9Y5S8 564 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 MSL3P1P0C860 447 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SRGAP2CP0DJJ0 459 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SRGAP2BP0DMP2 458 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ATF2P15336 505 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 PLCG1P19174 1290 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SLC18A1P54219 525 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SNF8Q96H20 258 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TMEM120AQ9BXJ8 343 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CLK4Q9HAZ1 481 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ERVK-5Q9HDB9 667 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SEL1LQ9UBV2 794 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 PADI4Q9UM07 663 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TIMM22Q9Y584 194 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 H3BSA7 217 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 NOL3O60936 208 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CLASP2O75122 1294 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 MAN1A1P33908 653 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 COILP38432 576 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 WASHC5Q12768 1159 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TBCCQ15814 346 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 RABGAP1LQ5R372 815 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ZNF571Q7Z3V5 609 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 KSR1Q8IVT5 923 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 PDZD8Q8NEN9 1154 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ANKK1Q8NFD2 765 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 GPRC5AQ8NFJ5 357 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 SUN5Q8TC36 379 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 CNBD2Q96M20 576 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 AK8Q96MA6 479 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 PANX3Q96QZ0 392 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 AP5M1Q9H0R1 490 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ZNF696Q9H7X3 374 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 ANAPC5Q9UJX4 755 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 APPL1Q9UKG1 709 aa11.35□□□□□ -0.59
CLSTN3-207ENST00000537408 TNS1Q9HBL0 1735 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 FCHO1O14526 889 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 BUD23O43709 281 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PEX1O43933 1283 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 BMP3P12645 472 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 CDH2P19022 906 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 VEGFBP49765 207 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 STAT2P52630 851 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PFKPQ01813 784 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 MTMR2Q13614 643 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 NCOA4Q13772 614 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 ALX1Q15699 326 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 ZNF829Q3KNS6 432 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RARS2Q5T160 578 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 IYDQ6PHW0 289 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 DHRS4L2Q6PKH6 230 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 GRK7Q8WTQ7 553 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 GCNAQ96QF7 691 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 IDI2Q9BXS1 227 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RBM38Q9H0Z9 239 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RETREG1Q9H6L5 497 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 TAGLN3Q9UI15 199 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 ZBTB21Q9ULJ3 1066 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms