RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 HOXB8P17481 243 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 TNNI1P19237 187 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 WNT7BP56706 349 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 MEI1Q5TIA1 1274 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 RSPO2Q6UXX9 243 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 PNKPQ96T60 521 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 ADAM7Q9H2U9 754 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 PDE11AQ9HCR9 933 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 MAN1C1Q9NR34 630 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 SLC38A7Q9NVC3 462 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 CPSF3Q9UKF6 684 aaKnown RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 SPDYE4A6NLX3 237 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 TGM5O43548 720 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 ZACNQ401N2 412 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 LMBRD2Q68DH5 695 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 ZNF572Q7Z3I7 529 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 LRRC57Q8N9N7 239 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 TPCN2Q8NHX9 752 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 CLSTN3Q9BQT9 956 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 POMKQ9H5K3 350 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 RPF1Q9H9Y2 349 aaKnown RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 TAS2R14Q9NYV8 317 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 PRKAG3Q9UGI9 489 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 NOCTQ9UK39 431 aaKnown RBP12.69□□□□□ -0.38
CLIP1-208ENST00000537004 NCANO14594 1321 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 PTPRJQ12913 1337 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 CCDC151A5D8V7 595 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 PPEF2O14830 753 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 CYP26A1O43174 497 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 GLUD1P00367 558 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 TMEM253P0C7T8 217 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 GCNT1Q02742 428 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 BRD3Q15059 726 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 PSMD5Q16401 504 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 CCDC181Q5TID7 509 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 JADE1Q6IE81 842 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 CC2D1AQ6P1N0 951 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-208ENST00000537004 EPS8L1Q8TE68 723 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 TATDN2Q93075 761 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 ELMO3Q96BJ8 720 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 PI4K2AQ9BTU6 479 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 PHF7Q9BWX1 381 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-208ENST00000537004 RAB21Q9UL25 225 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 PACSIN2Q9UNF0 486 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-208ENST00000537004 SSX2IPQ9Y2D8 614 aa12.68□□□□□ -0.38
CLIP1-208ENST00000537004 TMEM189-UBE2V1I3L0A0 370 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ZRANB2O95218 330 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 NFICP08651 508 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ABCB4P21439 1286 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 FGFR3P22607 806 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ITIH3Q06033 890 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 C2orf54Q08AI8 447 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ZBTB6Q15916 424 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 TDRD10Q5VZ19 366 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 CES5AQ6NT32 575 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 NOP9Q86U38 636 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 SLC47A2Q86VL8 602 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 CTNNBL1Q8WYA6 563 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 PIK3R5Q8WYR1 880 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 UROC1Q96N76 676 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 PLEKHA5Q9HAU0 1116 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 NUB1Q9Y5A7 615 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ANKRD62A6NC57 917 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 SEC31AO94979 1220 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 HLA-DRAP01903 254 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 C4BPAP04003 597 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 PIK3CAP42336 1068 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 DNA2P51530 1060 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ELAVL2Q12926 359 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 BIRC3Q13489 604 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 WDR44Q5JSH3 913 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 LILRA6Q6PI73 481 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ENOSF1Q7L5Y1 443 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 SLC35G2Q8TBE7 412 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 RFFLQ8WZ73 363 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
CLIP1-208ENST00000537004 CGRRF1Q99675 332 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 GOLPH3Q9H4A6 298 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ARFGAP3Q9NP61 516 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 ACP6Q9NPH0 428 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 DZANK1Q9NVP4 752 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 EHD2Q9NZN4 543 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 FNIP2Q9P278 1114 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 MUTYHQ9UIF7 546 aa12.67□□□□□ -0.38
CLIP1-208ENST00000537004 CCDC195A0A1B0GUA6 201 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 FAM170AA1A519 330 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 FAM86C2PA6NEL3 165 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 LOC730098B7Z3J9 87 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 VNN1O95497 513 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 CYP11B1P15538 503 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 CHRNB2P17787 502 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 OR1D2P34982 312 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 PAFAH1B1P43034 410 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 RPS6KA1Q15418 735 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TAF3Q5VWG9 929 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SCARA3Q6AZY7 606 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SLFN11Q7Z7L1 901 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 RNF135Q8IUD6 432 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SPATA4Q8NEY3 305 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms