RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 DENND2CQ68D51 928 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 FCRLBQ6BAA4 426 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 DARS2Q6PI48 645 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 MTHFD1LQ6UB35 978 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 AMIGO2Q86SJ2 522 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 GAS2L3Q86XJ1 694 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 FMNL3Q8IVF7 1028 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-238ENST00000534296 RP9Q8TA86 221 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 IPCEF1Q8WWN9 437 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 ATG4AQ8WYN0 398 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 RFKQ969G6 155 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 PPP1R9BQ96SB3 815 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 DPCDQ9BVM2 203 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 LRRC27Q9C0I9 530 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 MS4A7Q9GZW8 240 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 ZCWPW1Q9H0M4 648 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 ZMAT3Q9HA38 289 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 A1CFQ9NQ94 594 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 PRDM11Q9NQV5 511 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 OGDHLQ9ULD0 1010 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 NDRG4Q9ULP0 352 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 VWC2LB2RUY7 222 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 TSPAN6O43657 245 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 INMTO95050 263 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 IL6RP08887 468 aaPredicted RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 ATF3P18847 181 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 KLRC1P26715 233 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 CYP2C18P33260 490 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 LIPAP38571 399 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 CLCN2P51788 898 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 FAM193AP78312 1265 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 MYO1EQ12965 1108 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 BOP1Q14137 746 aaKnown RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 CNN3Q15417 329 aaKnown RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 PLA1AQ53H76 456 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 PCID2Q5JVF3 399 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 CERCAMQ5T4B2 595 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 CCDC149Q6ZUS6 474 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 OVCH2Q7RTZ1 564 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 RAB11FIP4Q86YS3 637 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 CELF5Q8N6W0 485 aaKnown RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 FAM98AQ8NCA5 519 aaKnown RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 XAGE5Q8WWM1 108 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 SPSB4Q96A44 273 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 VOPP1Q96AW1 172 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 PRDM13Q9H4Q3 707 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 TFCP2L1Q9NZI6 479 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 SH3BP4Q9P0V3 963 aa3.43□□□□□ -1.86
CD44-238ENST00000534296 AFF4Q9UHB7 1163 aaKnown RBP3.43□□□□□ -1.86
CD44-238ENST00000534296 LOC102723971A0A1B0GUV8 181 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 A1L4Q6 167 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 MBD3L4A6NDZ8 208 aaPredicted RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 MBD3L3A6NE82 208 aaPredicted RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 TARM1B6A8C7 271 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 GOLIM4O00461 696 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 CCP110O43303 1012 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 RASSF9O75901 435 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 PRKCGP05129 697 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 FESP07332 822 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 MYBP10242 640 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 RPL17P18621 184 aaKnown RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 DGKEP52429 567 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 ARFIP2P53365 341 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 ATXN1P54253 815 aaKnown RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 SUMO2P61956 95 aaKnown RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 GRM1Q13255 1194 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 CTBP1Q13363 440 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 POLD3Q15054 466 aaPredicted RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 LLGL1Q15334 1064 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 KIAA0753Q2KHM9 967 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 CERKLQ49MI3 558 aaPredicted RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 DEPDC1Q5TB30 811 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 ZNF788Q6ZQV5 615 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 PARS2Q7L3T8 475 aaKnown RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 MAVSQ7Z434 540 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 KIAA0319LQ8IZA0 1049 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 NGDNQ8NEJ9 315 aaKnown RBP3.42□□□□□ -1.86
CD44-238ENST00000534296 ABHD11Q8NFV4 315 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 IL31RAQ8NI17 732 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 BPIFB1Q8TDL5 484 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 LRTOMTQ8WZ04 291 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 RAPGEF4Q8WZA2 1011 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 GLG1Q92896 1179 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 R3HDM4Q96D70 268 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 MESP1Q9BRJ9 268 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 DPH1Q9BZG8 443 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 ZNF287Q9HBT7 754 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 SERHLQ9NQF3 203 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 SACM1LQ9NTJ5 587 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 CHPF2Q9P2E5 772 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 DKK3Q9UBP4 350 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 HDAC9Q9UKV0 1011 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 L1RE1Q9UN81 338 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 ADAMTS5Q9UNA0 930 aa3.42□□□□□ -1.86
CD44-238ENST00000534296 LRRC3CA6NJW4 275 aa3.41□□□□□ -1.86
CD44-238ENST00000534296 LINC01548A6NM66 108 aa3.41□□□□□ -1.86
CD44-238ENST00000534296 VSTM5A8MXK1 200 aa3.41□□□□□ -1.86
CD44-238ENST00000534296 H0YIZ8 118 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms