RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	TTPAL	Q9BTX7	342 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	COLEC11	Q9BWP8	271 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	CXorf36	Q9H7Y0	433 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	KLC4	Q9NSK0	619 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	LRIT1	Q9P2V4	623 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	ZNF212	Q9UDV6	495 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	SERTAD3	Q9UJW9	196 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	ING1	Q9UK53	422 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-233	ENST00000531141	PACSIN3	Q9UKS6	424 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	HDAC9	Q9UKV0	1011 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	PHTF1	Q9UMS5	762 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	CDY1	Q9Y6F8	540 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-233	ENST00000531141	ADGRA2	Q96PE1	1338 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	COL4A3	Q01955	1670 aa		4.64	□□□□□ -1.67
CD44-233	ENST00000531141	WDR27	A2RRH5	827 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	POM121B	A6NF01	834 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141		F8W8V4	182 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	SLC16A3	O15427	465 aa	Known RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	AKAP8	O43823	692 aa	Known RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	URI1	O94763	535 aa	Predicted RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	GC	P02774	474 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	MT-ND5	P03915	603 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	SLPI	P03973	132 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	RHO	P08100	348 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	MYL3	P08590	195 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	KCNA3	P22001	575 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	MPL	P40238	635 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	PRKAG1	P54619	331 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	AK2	P54819	239 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	HTRA4	P83105	476 aa	Predicted RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	FOXI1	Q12951	378 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	CERCAM	Q5T4B2	595 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	IL31	Q6EBC2	164 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	PCSK4	Q6UW60	755 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	DPP9	Q86TI2	863 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	DTX2	Q86UW9	622 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	ZNF280B	Q86YH2	543 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	CCDC33	Q8N5R6	958 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	SVIP	Q8NHG7	77 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	ATG4A	Q8WYN0	398 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	NAA15	Q9BXJ9	866 aa	Known RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141	STARD7	Q9NQZ5	370 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	EHD3	Q9NZN3	535 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	MID2	Q9UJV3	735 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	ITGB1BP2	Q9UKP3	347 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	SH2B3	Q9UQQ2	575 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	SSX2IP	Q9Y2D8	614 aa		4.63	□□□□□ -1.67
CD44-233	ENST00000531141	WDR33	Q9C0J8	1336 aa	Known RBP	4.63	□□□□□ -1.67
CD44-233	ENST00000531141		A0A087X1B8	175 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141		A0A1W2PPC4	97 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	AQP7P3	A6NL99	342 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CLCA1	A8K7I4	914 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	PPM1D	O15297	605 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	THAP12	O43422	761 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	RRP9	O43818	475 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CSF1R	P07333	972 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CHRM2	P08172	466 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	IFIT2	P09913	472 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	IL1R2	P27930	398 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ADRA1B	P35368	520 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	STT3A	P46977	705 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CPT1A	P50416	773 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	NEK3	P51956	506 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ATXN1	P54253	815 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	TGFB2	P61812	414 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	FSTL1	Q12841	308 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	EIF2B5	Q13144	721 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ARHGEF7	Q14155	803 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	SLC29A2	Q14542	456 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CACHD1	Q5VU97	1274 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ZDHHC24	Q6UX98	284 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	TSHZ1	Q6ZSZ6	1077 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	UNC13D	Q70J99	1090 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	PEG10	Q86TG7	708 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	LIX1L	Q8IVB5	337 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	SPART	Q8N0X7	666 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	FANCB	Q8NB91	859 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	OSCP1	Q8WVF1	389 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	TBCB	Q99426	244 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	CHST8	Q9H2A9	424 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	TMPRSS5	Q9H3S3	457 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	FAM83D	Q9H4H8	585 aa		4.62	□□□□□ -1.67
CD44-233	ENST00000531141	TRMT13	Q9NUP7	481 aa	Known RBP	4.62	□□□□□ -1.67
CD44-233	ENST00000531141	ADM5	C9JUS6	153 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	hCG_1984214	I3L0E3	225 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	SRGAP2	O75044	1071 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	PTDSS1	P48651	473 aa	Known RBP	4.61	□□□□□ -1.67
CD44-233	ENST00000531141	ALDH5A1	P51649	535 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-233	ENST00000531141	MAPK10	P53779	464 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	UBE4A	Q14139	1066 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	TBCC	Q15814	346 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	ERCC6L	Q2NKX8	1250 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	KAZN	Q674X7	775 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	OR2C3	Q8N628	320 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	RNF152	Q8N8N0	203 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	TFAP2B	Q92481	460 aa		4.61	□□□□□ -1.67
CD44-233	ENST00000531141	GJA10	Q969M2	543 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms