RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZNHIT6	Q9NWK9	470 aa	Known RBP	6.15	□□□□□ -1.42
CD44-231	ENST00000531110	SIDT1	Q9NXL6	827 aa	Known RBP	6.15	□□□□□ -1.42
CD44-231	ENST00000531110	ZIM2	Q9NZV7	527 aa		6.15	□□□□□ -1.42
CD44-231	ENST00000531110	SEPT10	Q9P0V9	454 aa		6.15	□□□□□ -1.42
CD44-231	ENST00000531110	MAP3K1	Q13233	1512 aa		6.15	□□□□□ -1.43
CD44-231	ENST00000531110	RB1CC1	Q8TDY2	1594 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	ERICH2	A1L162	156 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	DRGX	A6NNA5	263 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CYTH3	O43739	400 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	SPATA31D3	P0C874	917 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	TGFB3	P10600	412 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	INSRR	P14616	1297 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	HNRNPH1	P31943	449 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CCNH	P51946	323 aa	Predicted RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	HDAC4	P56524	1084 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CREM	Q03060	361 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	WASHC5	Q12768	1159 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	DHX8	Q14562	1220 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	UBXN2B	Q14CS0	331 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	PABPC1L	Q4VXU2	614 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	FAM102A	Q5T9C2	384 aa	Predicted RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	AGAP9	Q5VTM2	703 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	METRNL	Q641Q3	311 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CRIP3	Q6Q6R5	217 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	SPATA31D4	Q6ZUB0	917 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	GDF7	Q7Z4P5	450 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	NDUFAF2	Q8N183	169 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	C3orf20	Q8ND61	904 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CCDC112	Q8NEF3	446 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	IL17RD	Q8NFM7	739 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	B4GALNT2	Q8NHY0	566 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	TAF4B	Q92750	862 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	HPS3	Q969F9	1004 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	LENG9	Q96B70	501 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	CLPTM1L	Q96KA5	538 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	RUFY1	Q96T51	708 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	MOV10L1	Q9BXT6	1211 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	SLC12A5	Q9H2X9	1139 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	PRKRIP1	Q9H875	184 aa	Predicted RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	EIF2B4	Q9UI10	523 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	TMCC3	Q9ULS5	477 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	EID1	Q9Y6B2	187 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	LRPPRC	P42704	1394 aa	Known RBP	6.14	□□□□□ -1.43
CD44-231	ENST00000531110	ANKRD36B	Q8N2N9	1353 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	KIF27	Q86VH2	1401 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	VPS8	Q8N3P4	1428 aa		6.14	□□□□□ -1.43
CD44-231	ENST00000531110	GOLGA6L4	A6NEF3	574 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ERLIN2	O94905	339 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	GCSH	P23434	173 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	APOBEC3A	P31941	199 aa	Predicted RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	S100A5	P33763	92 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	PTGS2	P35354	604 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	GCK	P35557	465 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TCF7	P36402	384 aa	Predicted RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	AMPH	P49418	695 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	PAPOLA	P51003	745 aa	Known RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TUBA4A	P68366	448 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZBED6	P86452	979 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	NHLH2	Q02577	135 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZBTB17	Q13105	803 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	MPP3	Q13368	585 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TUBA3C	Q13748	450 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	PGS1	Q32NB8	556 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	CCDC158	Q5M9N0	1113 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ANKRD45	Q5TZF3	282 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	EMC10	Q5UCC4	262 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF529	Q6P280	563 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TUBA3E	Q6PEY2	450 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	SLC30A9	Q6PML9	568 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	LRRC31	Q6UY01	552 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	GADL1	Q6ZQY3	521 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	DAAM2	Q86T65	1068 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	LURAP1L	Q8IV03	231 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	BRSK2	Q8IWQ3	736 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	RPAP2	Q8IXW5	612 aa	Predicted RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TTC30B	Q8N4P2	665 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TTC39C	Q8N584	583 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ARL6IP6	Q8N6S5	226 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	DCBLD1	Q8N8Z6	715 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ACMSD	Q8TDX5	336 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	STON2	Q8WXE9	905 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	JDP2	Q8WYK2	163 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	KAT5	Q92993	513 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	PGBD4	Q96DM1	585 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	MVB12A	Q96EY5	273 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	CDHR1	Q96JP9	859 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	SIN3A	Q96ST3	1273 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF747	Q9BV97	191 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	UPF3B	Q9BZI7	483 aa	Known RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	NMRK2	Q9NPI5	230 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	KMT5A	Q9NQR1	393 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	DCAF16	Q9NXF7	216 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	TCEAL9	Q9UHQ7	104 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	XPO7	Q9UIA9	1087 aa	Known RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	LCMT1	Q9UIC8	334 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	SORCS3	Q9UPU3	1222 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF148	Q9UQR1	794 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF510	Q9Y2H8	683 aa		6.13	□□□□□ -1.43
CD44-231	ENST00000531110	NOSIP	Q9Y314	301 aa	Known RBP	6.13	□□□□□ -1.43
CD44-231	ENST00000531110	LSM1	O15116	133 aa	Known RBP	6.12	□□□□□ -1.43

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