RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 NFIL3Q16649 462 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 ZACNQ401N2 412 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 TXNDC8Q6A555 127 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 B3GALNT2Q8NCR0 500 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 NKD2Q969F2 451 aaPredicted RBP14.2□□□□□ -0.14
VPS28-211ENST00000530790 CLDN23Q96B33 292 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 ZFYVE19Q96K21 471 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 SPATA17Q96L03 361 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 LRRC3BQ96PB8 259 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 ELOVL4Q9GZR5 314 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 DPEP3Q9H4B8 488 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 C8orf33Q9H7E9 229 aaPredicted RBP14.2□□□□□ -0.14
VPS28-211ENST00000530790 TRPC7Q9HCX4 862 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 RMND1Q9NWS8 449 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 EHD2Q9NZN4 543 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 ATP8B3O60423 1300 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 TRAV19A0A0A6YYK7 116 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 PRR23AA6NEV1 266 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 IKBKBO14920 756 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 VNN1O95497 513 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 C4BPAP04003 597 aaKnown RBP14.19□□□□□ -0.14
VPS28-211ENST00000530790 SP9P0CG40 484 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 KRT13P13646 458 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 PTPN1P18031 435 aaKnown RBP14.19□□□□□ -0.14
VPS28-211ENST00000530790 CCNE1P24864 410 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 VAMP7P51809 220 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 PNOCQ13519 176 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 DENND5BQ6ZUT9 1274 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 INTS8Q75QN2 995 aaKnown RBP14.19□□□□□ -0.14
VPS28-211ENST00000530790 MON1AQ86VX9 555 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 FAM186BQ8IYM0 893 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 FMR1NBQ8N0W7 255 aaPredicted RBP14.19□□□□□ -0.14
VPS28-211ENST00000530790 USP13Q92995 863 aaPredicted RBP14.19□□□□□ -0.14
VPS28-211ENST00000530790 IER2Q9BTL4 223 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 IMPG2Q9BZV3 1241 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 TDP1Q9NUW8 608 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 NME7Q9Y5B8 376 aa14.19□□□□□ -0.14
VPS28-211ENST00000530790 PATJQ8NI35 1801 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 F8VP50 259 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 SPECC1L-ADORA2AF8WAN1 911 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 AKAP3O75969 853 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 CKMP06732 381 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 CTHP32929 405 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 PSMC2P35998 433 aaKnown RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 RAP1GAPP47736 663 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 SOX9P48436 509 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 PDE6CP51160 858 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 FAM160A1Q05DH4 1040 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 LRRC32Q14392 662 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 ZNF268Q14587 947 aaPredicted RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 SGSM1Q2NKQ1 1148 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 EDRF1Q3B7T1 1238 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 CC2D1AQ6P1N0 951 aaPredicted RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 SV2AQ7L0J3 742 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 ASCL5Q7RTU5 278 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 RALGPS2Q86X27 583 aaPredicted RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 SMYD4Q8IYR2 804 aaPredicted RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 TTC8Q8TAM2 541 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 TAF4BQ92750 862 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 TNIP3Q96KP6 325 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 C8orf48Q96LL4 319 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 ZNF518BQ9C0D4 1074 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 CHRDQ9H2X0 955 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 GTSE1Q9NYZ3 720 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 HOOK1Q9UJC3 728 aaKnown RBP14.18□□□□□ -0.14
VPS28-211ENST00000530790 FBXO4Q9UKT5 387 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 CCL26Q9Y258 94 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 VPS13AQ96RL7 3174 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 USP34Q70CQ2 3546 aa14.18□□□□□ -0.14
VPS28-211ENST00000530790 OBSL1O75147 1896 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 SMC2O95347 1197 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 HLA-DRAP01903 254 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 USP17L7P0C7H9 530 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 TRIM49P0CI25 452 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 TRIM49CP0CI26 452 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 TRIM21P19474 475 aaKnown RBP14.17□□□□□ -0.14
VPS28-211ENST00000530790 CDH8P55286 799 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 NOP14P78316 857 aaKnown RBP14.17□□□□□ -0.14
VPS28-211ENST00000530790 TNK2Q07912 1038 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 ADAM9Q13443 819 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 ITPRIPL2Q3MIP1 535 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 ZNF528Q3MIS6 628 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 ZCWPW2Q504Y3 356 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 MAML2Q8IZL2 1156 aaPredicted RBP14.17□□□□□ -0.14
VPS28-211ENST00000530790 ZNF687Q8N1G0 1237 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 ELMO3Q96BJ8 720 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 SDCBP2Q9H190 292 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 SEMA4AQ9H3S1 761 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 PRMT8Q9NR22 394 aaPredicted RBP14.17□□□□□ -0.14
VPS28-211ENST00000530790 R4GN57 208 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 MYO15AQ9UKN7 3530 aa14.17□□□□□ -0.14
VPS28-211ENST00000530790 KIF26AQ9ULI4 1882 aaPredicted RBP14.16□□□□□ -0.14
VPS28-211ENST00000530790 C2orf78A6NCI8 922 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 ASS1P00966 412 aaKnown RBP14.16□□□□□ -0.14
VPS28-211ENST00000530790 EPB41P11171 864 aaKnown RBP14.16□□□□□ -0.14
VPS28-211ENST00000530790 GCLMP48507 274 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 USP46P62068 366 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 CSTF1Q05048 431 aaKnown RBP14.16□□□□□ -0.14
VPS28-211ENST00000530790 ENPEPQ07075 957 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 USP4Q13107 963 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms