RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CYP11B1P15538 503 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 FERP16591 822 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 BRD2P25440 801 aaKnown RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 CCDC173Q0VFZ6 552 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 PPM1LQ5SGD2 360 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 FAM171BQ6P995 826 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 SYCE2Q6PIF2 218 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 TMC5Q6UXY8 1006 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 CCDC149Q6ZUS6 474 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 SPATA2LQ8IUW3 424 aaPredicted RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 TCEAL8Q8IYN2 117 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 CRYBG2Q8N1P7 616 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 TTC9BQ8N6N2 239 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 C12orf29Q8N999 325 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 ZNF397Q8NF99 534 aaPredicted RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 OR8K1Q8NGG5 319 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 MYCBPAPQ8TBZ2 947 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 SPPL2BQ8TCT7 592 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 C2orf15Q8WU43 125 aaKnown RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 ANP32BQ92688 251 aaKnown RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 SEPT5Q99719 369 aaPredicted RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 CRISPLD1Q9H336 500 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 FAM49BQ9NUQ9 324 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 INSL5Q9Y5Q6 135 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 BRWD1Q9NSI6 2320 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 CCL16O15467 120 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 ZMYND10O75800 440 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 CFHP08603 1231 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 SKILP12757 684 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 CCDC130P13994 396 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 HOXB8P17481 243 aaPredicted RBP16.25■□□□□ 0.19
LSM1-203ENST00000520755 CHRNB2P17787 502 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 GNA15P30679 374 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 TFF2Q03403 129 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 SMARCB1Q12824 385 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 MAPRE1Q15691 268 aaKnown RBP16.25■□□□□ 0.19
LSM1-203ENST00000520755 MGAT5BQ3V5L5 792 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 C4orf50Q6ZRC1 276 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 PCED1BQ96HM7 432 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 MSLNLQ96KJ4 702 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 PANX2Q96RD6 677 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 RHOBTB2Q9BYZ6 727 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 DNAI2Q9GZS0 605 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 NUCKS1Q9H1E3 243 aaKnown RBP16.25■□□□□ 0.19
LSM1-203ENST00000520755 ARHGAP20Q9P2F6 1191 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 CD207Q9UJ71 328 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 MAFFQ9ULX9 164 aa16.25■□□□□ 0.19
LSM1-203ENST00000520755 DENND4CQ5VZ89 1909 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 CCDC195A0A1B0GUA6 201 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 O00370 1275 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 SOAT2O75908 522 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 LRG1P02750 347 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 CD19P15391 556 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 CYP2F1P24903 491 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 SSTR3P32745 418 aaPredicted RBP16.24■□□□□ 0.19
LSM1-203ENST00000520755 PDE6CP51160 858 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 GSDMDP57764 484 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 TWF1Q12792 350 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 PAQR9Q6ZVX9 377 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 ZNF571Q7Z3V5 609 aaPredicted RBP16.24■□□□□ 0.19
LSM1-203ENST00000520755 FUKQ8N0W3 1084 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 FEZF2Q8TBJ5 459 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 CHP1Q99653 195 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 MED10Q9BTT4 135 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 B3GNT5Q9BYG0 378 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 HAUS4Q9H6D7 363 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 ZDHHC7Q9NXF8 308 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 THEGQ9P2T0 379 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 CDH22Q9UJ99 828 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 YIPF1Q9Y548 306 aa16.24■□□□□ 0.19
LSM1-203ENST00000520755 DOCK6Q96HP0 2047 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 CLDN5O00501 218 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 THAP12O43422 761 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 SERPING1P05155 500 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 MMEP08473 750 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 HNRNPA1P09651 372 aaKnown RBP eCLIP16.23■□□□□ 0.19
LSM1-203ENST00000520755 HAPLN1P10915 354 aaPredicted RBP16.23■□□□□ 0.19
LSM1-203ENST00000520755 VDRP11473 427 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 BDNFP23560 247 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 ALDH1A3P47895 512 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 FMO1Q01740 532 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 PTK2Q05397 1052 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 KLHL30Q0D2K2 578 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 PPP1R26Q5T8A7 1209 aaPredicted RBP16.23■□□□□ 0.19
LSM1-203ENST00000520755 TAF3Q5VWG9 929 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 ARHGAP17Q68EM7 881 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 CES5AQ6NT32 575 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 ZNF606Q8WXB4 792 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 FUBP3Q96I24 572 aaKnown RBP eCLIP16.23■□□□□ 0.19
LSM1-203ENST00000520755 HEXIM2Q96MH2 286 aaKnown RBP16.23■□□□□ 0.19
LSM1-203ENST00000520755 PRKD2Q9BZL6 878 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 PIDD1Q9HB75 910 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 ABCB6Q9NP58 842 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 TMEM30AQ9NV96 361 aa16.23■□□□□ 0.19
LSM1-203ENST00000520755 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.23■□□□□ 0.19
LSM1-203ENST00000520755 ATP8B3O60423 1300 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 GOLGA6L6A8MZA4 724 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 ADORA2BP29275 332 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 TUFMP49411 452 aaKnown RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 GPR15P49685 360 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms