RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DDR1Q08345 913 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 ITIH4Q14624 930 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 PGM5Q15124 567 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 NUP93Q8N1F7 819 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 C3orf20Q8ND61 904 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 AKT1S1Q96B36 256 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 DCLK3Q9C098 648 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 CD4P01730 458 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 VTNP04004 478 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 CDH8P55286 799 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 EFHC1Q5JVL4 640 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 FBXO16Q8IX29 292 aaPredicted RBP13.19□□□□□ -0.3
USP53-209ENST00000514665 EME1Q96AY2 570 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 CMTM5Q96DZ9 223 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 MRPL40Q9NQ50 206 aaKnown RBP13.19□□□□□ -0.3
USP53-209ENST00000514665 TJP2Q9UDY2 1190 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 USP18Q9UMW8 372 aa13.19□□□□□ -0.3
USP53-209ENST00000514665 VIL1P09327 827 aaKnown RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 PBX1P40424 430 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 PTPN11Q06124 597 aaPredicted RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 MCL1Q07820 350 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 MPZL3Q6UWV2 235 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 PACS2Q86VP3 889 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 SPATA2LQ8IUW3 424 aaPredicted RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 CERS5Q8N5B7 392 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 EPS8L1Q8TE68 723 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 C10orf88Q9H8K7 445 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 PCDHA3Q9Y5H8 950 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 SPATA31A6Q5VVP1 1343 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 SLC25A27O95847 323 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 PRKCIP41743 596 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 TEDDM1Q5T9Z0 273 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 FAM84AQ96KN4 292 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 KCNMB3Q9NPA1 279 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 ZSCAN5DPP0CG00 497 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 STAG3L1P0CL83 205 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 TGM2P21980 687 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 SLC15A2Q16348 729 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 ANO4Q32M45 955 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 DACT2Q5SW24 774 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 EFHBQ8N7U6 833 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 TFB1MQ8WVM0 346 aaKnown RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 TNFRSF25Q93038 417 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 ASIC4Q96FT7 647 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 CNPY3Q9BT09 278 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 MRPL1Q9BYD6 325 aaKnown RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 GANQ9H2C0 597 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 DNPEPQ9ULA0 475 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 A0A087WZ62 844 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 ANGPT2O15123 496 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 VDRP11473 427 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 RECQLP46063 649 aaPredicted RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 R3HDM1Q15032 1099 aaKnown RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 ASAP3Q8TDY4 903 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 FDXACB1Q9BRP7 624 aaPredicted RBP13.18□□□□□ -0.3
USP53-209ENST00000514665 IL1RL2Q9HB29 575 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP53-209ENST00000514665 CTNNAL1Q9UBT7 734 aa13.18□□□□□ -0.3
USP53-209ENST00000514665 TLR2O60603 784 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 BGNP21810 368 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 ACADSBP45954 432 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 VCPP55072 806 aaKnown RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 LBRQ14739 615 aaKnown RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 MAPRE2Q15555 327 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 ECM1Q16610 540 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 C4orf32Q8N8J7 132 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 TRAPPC12Q8WVT3 735 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 IDI2Q9BXS1 227 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 FGFBP2Q9BYJ0 223 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 CEP41Q9BYV8 373 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 PIH1D1Q9NWS0 290 aaKnown RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 SYCE1LA8MT33 242 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 DNAJC8O75937 253 aaPredicted RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 FAM200BP0CF97 657 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 ELK3P41970 407 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 GLRBP48167 497 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 AQP5P55064 265 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 RNF217Q8TC41 542 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 CPB2Q96IY4 423 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 FRMD8Q9BZ67 464 aaPredicted RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 NINJ2Q9NZG7 142 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 CDY2AQ9Y6F7 541 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 CDY1Q9Y6F8 540 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 PIK3CDO00329 1044 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 SHBGP04278 402 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 C1QBPQ07021 282 aaKnown RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 PAN2Q504Q3 1202 aaKnown RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 DEFB132Q7Z7B7 95 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 LNX1Q8TBB1 728 aaPredicted RBP13.17□□□□□ -0.3
USP53-209ENST00000514665 ASTN1O14525 1302 aa13.17□□□□□ -0.3
USP53-209ENST00000514665 F8VP50 259 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 AKAP10O43572 662 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 TPST1O60507 370 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 RPS6KA5O75582 802 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 IL10P22301 178 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 TAF6P49848 677 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 GCNT1Q02742 428 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 BTKQ06187 659 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 LAMC2Q13753 1193 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms