RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CYTH4Q9UIA0 394 aa16.87■□□□□ 0.29
NUP54-214ENST00000514307 PRG3Q9Y2Y8 225 aaPredicted RBP16.87■□□□□ 0.29
NUP54-214ENST00000514307 NME7Q9Y5B8 376 aa16.87■□□□□ 0.29
NUP54-214ENST00000514307 PCDHA3Q9Y5H8 950 aa16.87■□□□□ 0.29
NUP54-214ENST00000514307 GOLGA8SH3BPF8 625 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 SRGAP2O75044 1071 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 CCDC130P13994 396 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 CTNNA2P26232 953 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 GTF2F1P35269 517 aaKnown RBP eCLIP16.86■□□□□ 0.29
NUP54-214ENST00000514307 PLA2G4AP47712 749 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 RPL34P49207 117 aaKnown RBP16.86■□□□□ 0.29
NUP54-214ENST00000514307 SLC6A3Q01959 620 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 C2CD6Q53TS8 623 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 INTS6LQ5JSJ4 861 aaKnown RBP16.86■□□□□ 0.29
NUP54-214ENST00000514307 EFHC1Q5JVL4 640 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 PPP1R15BQ5SWA1 713 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 CYP4A22Q5TCH4 519 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 CCDC70Q6NSX1 233 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 PMF1Q6P1K2 205 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 UBE2Q1Q7Z7E8 422 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 FUKQ8N0W3 1084 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 FNIP1Q8TF40 1166 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 HASPINQ8TF76 798 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 UBXN4Q92575 508 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 B3GNT5Q9BYG0 378 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 ASNSD1Q9NWL6 643 aa16.86■□□□□ 0.29
NUP54-214ENST00000514307 SF3B1O75533 1304 aaKnown RBP eCLIP16.86■□□□□ 0.29
NUP54-214ENST00000514307 KIAA0100Q14667 2235 aaKnown RBP16.85■□□□□ 0.29
NUP54-214ENST00000514307 TCRBV5S1A1TA0A578 114 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 MYBPHLA2RUH7 354 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 OR6C75A6NL08 312 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 CEP104O60308 925 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 RNF8O76064 485 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 ERBB2P04626 1255 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 NPR3P17342 541 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 SLC11A1P49279 550 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 BCAR1P56945 870 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 RWDD2BP57060 319 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 ITIH3Q06033 890 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 SMARCB1Q12824 385 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 NFE2Q16621 373 aaPredicted RBP16.85■□□□□ 0.29
NUP54-214ENST00000514307 HADHQ16836 314 aaKnown RBP16.85■□□□□ 0.29
NUP54-214ENST00000514307 SPOUT1Q5T280 376 aaKnown RBP16.85■□□□□ 0.29
NUP54-214ENST00000514307 FAM171A1Q5VUB5 890 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 ARCQ7LC44 396 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 CREG2Q8IUH2 290 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 RHOT1Q8IXI2 618 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 SMARCD1Q96GM5 515 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 LPIN3Q9BQK8 851 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 CARD9Q9H257 536 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 LRRC4Q9HBW1 653 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 CRTAC1Q9NQ79 661 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 STK39Q9UEW8 545 aa16.85■□□□□ 0.29
NUP54-214ENST00000514307 E5RJQ4 531 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 SART1O43290 800 aaKnown RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 AP1G2O75843 785 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 FBXO21O94952 628 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 FGFR3P22607 806 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 CXCR5P32302 372 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 RFC1P35251 1148 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 SSR1P43307 286 aaKnown RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 RGS7P49802 495 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 GATMP50440 423 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 FAM102AQ5T9C2 384 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 LRRC38Q5VT99 294 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 CC2D1AQ6P1N0 951 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 SPATA2LQ8IUW3 424 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 SCUBE3Q8IX30 993 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 CMTR2Q8IYT2 770 aaKnown RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 NIPA2Q8N8Q9 360 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 ACTRT1Q8TDG2 376 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 GOLGA1Q92805 767 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 PCED1BQ96HM7 432 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 BTBD6Q96KE9 485 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 CAPZA3Q96KX2 299 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 MCEEQ96PE7 176 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 HTATIP2Q9BUP3 242 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 AAASQ9NRG9 546 aa16.84■□□□□ 0.29
NUP54-214ENST00000514307 TTC7AQ9ULT0 858 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 PACSIN2Q9UNF0 486 aaPredicted RBP16.84■□□□□ 0.29
NUP54-214ENST00000514307 DDX3YO15523 660 aaKnown RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 CTIFO43310 598 aaKnown RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 HCRTO43612 131 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 ITGB1P05556 798 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 ITGB8P26012 769 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 CTNNA1P35221 906 aaKnown RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 PEX5P50542 639 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 DNA2P51530 1060 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 RPL7AP62424 266 aaKnown RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 FPGSQ05932 587 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 MRPL58Q14197 206 aaKnown RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 CTXN3Q4LDR2 81 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 ODF2Q5BJF6 829 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 KIAA0319Q5VV43 1072 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 PAQR9Q6ZVX9 377 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 ANKS3Q6ZW76 656 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 PIGZQ86VD9 579 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 CEP57Q86XR8 500 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 COG1Q8WTW3 980 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 MAIP1Q8WWC4 291 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms