RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MFSD1Q9H3U5 465 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 TMEM260Q9NX78 707 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 H2AFY2Q9P0M6 372 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 RABL2AQ9UBK7 228 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ATPIF1Q9UII2 106 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SYNDIG1LA6NDD5 238 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ALOX5P09917 674 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 PAMP19021 973 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 HADHAP40939 763 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CSE1LP55060 971 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC34A1Q06495 639 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 TRAP1Q12931 704 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ALCAMQ13740 583 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CENPPQ6IPU0 288 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SCUBE1Q8IWY4 988 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ATL2Q8NHH9 583 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ULK4Q96C45 1275 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 HDHD2Q9H0R4 259 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 KLHL11Q9NVR0 708 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CCL15-CCL14A0A0B4J2E2 113 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 O00370 1275 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC16A4O15374 487 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 LDHAP00338 332 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 GUCY1A2P33402 732 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 VAMP7P51809 220 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 TRAF2Q12933 501 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CCL15Q16663 113 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 TRMT5Q32P41 509 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 TEX13BQ9BXU2 312 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 GOLPH3Q9H4A6 298 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 SH3GLB2Q9NR46 395 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 CYP26B1Q9NR63 512 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 ASNSD1Q9NWL6 643 aa9.06□□□□□ -0.96
LIMCH1-218ENST00000513024 C19orf81C9J6K1 198 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CLDN3O15551 220 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 KRT36O76013 467 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 INHBEP58166 350 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 NR1D2Q14995 579 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SURF1Q15526 300 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TTC27Q6P3X3 843 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 RNFT2Q96EX2 444 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 RPF1Q9H9Y2 349 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 POLR1BQ9H9Y6 1135 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PPCSQ9HAB8 311 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 FBXO28Q9NVF7 368 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 DNAJC11Q9NVH1 559 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 BFARQ9NZS9 450 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SEL1LQ9UBV2 794 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 MLXQ9UH92 298 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 MOSPD1Q9UJG1 213 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 HAO1Q9UJM8 370 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 APPL1Q9UKG1 709 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PCDHGB4Q9UN71 923 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PPP2R3BQ9Y5P8 575 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ERBB3P21860 1342 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 USP42Q9H9J4 1324 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 FSBPO95073 299 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CALB1P05937 261 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 EPHX2P34913 555 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 GALCP54803 685 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 EZH2Q15910 746 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ARL13BQ3SXY8 428 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 NAALADL2Q58DX5 795 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 HEATR6Q6AI08 1181 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 USP49Q70CQ1 688 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 DDIASQ8IXT1 998 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CCDC36Q8IYA8 594 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 LRRC34Q8IZ02 419 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TTC8Q8TAM2 541 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 FNIP1Q8TF40 1166 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 FSD1LQ9BXM9 530 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ROPN1BQ9BZX4 212 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SERHL2Q9H4I8 314 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ROPN1Q9HAT0 212 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SERHLQ9NQF3 203 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SELENONQ9NZV5 590 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ING4Q9UNL4 249 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 A0A087WXM4 84 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TRAPPC3O43617 180 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CSPG5O95196 566 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 GUCA1CO95843 209 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SUPT20HL2P0C7V6 817 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PSMA4P25789 261 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 KCNJ1P48048 391 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ARPP19P56211 112 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SESN2P58004 480 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 C15orf59Q2T9L4 293 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF57Q68EA5 555 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PADI6Q6TGC4 694 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TMEM179Q6ZVK1 233 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 NLRP10Q86W26 655 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SYTL1Q8IYJ3 562 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 UXS1Q8NBZ7 420 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF507Q8TCN5 953 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 VPS50Q96JG6 964 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TMEM47Q9BQJ4 181 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 KIFC1Q9BW19 673 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SARS2Q9NP81 518 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 TOPORSQ9NS56 1045 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms