RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 DMAP1Q9NPF5 467 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 MOXD2PA6NHM9 499 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 RBAK-RBAKDNI3L0D1 243 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CDC25CP30307 473 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CHKAP35790 457 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CCL23P55773 120 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 SESN2P58004 480 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 PDIA2Q13087 525 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 LY6KQ17RY6 165 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 SPDYAQ5MJ70 313 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 HLA-DQA1Q5Y7H0 255 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ZC3H18Q86VM9 953 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 C7orf61Q8IZ16 206 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ZNF655Q8N720 491 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 TTC17Q96AE7 1141 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 RUBCNLQ9H714 662 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CCDC189A1A4V9 331 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 PP2D1A8MPX8 630 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MEI4A8MW99 385 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CLASP2O75122 1294 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 DCTN3O75935 186 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 POLBP06746 335 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ZNF286BP0CG31 522 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MYBP10242 640 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 USP10Q14694 798 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 PCSK7Q16549 785 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ZBTB41Q5SVQ8 909 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 IZUMO3Q5VZ72 239 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 KIAA1324Q6UXG2 1013 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 LRRC43Q8N309 656 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 TFB1MQ8WVM0 346 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 AP1M1Q9BXS5 423 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CELF4Q9BZC1 486 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 BRD8Q9H0E9 1235 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 KRCC1Q9NPI7 259 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 SNTG2Q9NY99 539 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 AHSPQ9NZD4 102 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 FBXO2Q9UK22 296 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 STK38LQ9Y2H1 464 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CDY2AQ9Y6F7 541 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 TRIM49BA6NDI0 452 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 PDZK1P1A8MUH7 402 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MTA2O94776 668 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 LARGE1O95461 756 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 FAM107AO95990 144 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 GLUD1P00367 558 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 TM4SF1P30408 202 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 RPL9P32969 192 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 MAPK8P45983 427 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 RFX5P48382 616 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 NPY2RP49146 381 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 FNTAP49354 379 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MAP3K10Q02779 954 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 INAVAQ3KP66 663 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CELF3Q5SZQ8 465 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 EMBQ6PCB8 327 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CTU1Q7Z7A3 348 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 SLC25A41Q8N5S1 370 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 IPMKQ8NFU5 416 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 EXD1Q8NHP7 514 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CD99L2Q8TCZ2 262 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MAGEC3Q8TD91 643 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 AGAP3Q96P47 875 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 TBC1D13Q9NVG8 400 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CPSF2Q9P2I0 782 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 SUFUQ9UMX1 484 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CEP152O94986 1710 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 ACKR2O00590 384 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ENC1O14682 589 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 VPS26AO75436 327 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 LGALS2P05162 132 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MYBL2P10244 700 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 SELPP16109 830 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MSH3P20585 1137 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 KELP23276 732 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MAPK1P28482 360 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 STAT4Q14765 748 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CATSPER3Q86XQ3 398 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CXorf40AQ8TE69 158 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 IL17RAQ96F46 866 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 NAF1Q96HR8 494 aaKnown RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 CAMKK2Q96RR4 588 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 GOLPH3Q9H4A6 298 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 SNX24Q9Y343 169 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 USP32Q8NFA0 1604 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 NPHP3-ACAD11A0A0J9YXS1 232 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 SSU72P8A0A1W2PR75 194 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 OR6C75A6NL08 312 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 GJB1P08034 283 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ARP10275 920 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 HPGDP15428 266 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 TNNI3P19429 210 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 PTGER2P43116 358 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 ARSEP51690 589 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CRYBB1P53674 252 aaPredicted RBP4.42□□□□□ -1.7
VCAN-209ENST00000513016 MDH1BQ5I0G3 518 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 NUGGCQ68CJ6 796 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 CXCL17Q6UXB2 119 aa4.42□□□□□ -1.7
VCAN-209ENST00000513016 MYO1HQ8N1T3 1032 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms