RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PLK4O00444 970 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 KCNN4O15554 427 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MED7O43513 233 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BCAR3O75815 825 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TTLL1O95922 423 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 OATP04181 439 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 HLA-DOAP06340 250 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ZNF18P17022 549 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PDHA2P29803 388 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 HADHAP40939 763 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ABL2P42684 1182 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 GSCP56915 257 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 AP1S1P61966 158 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SLC39A6Q13433 755 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MPP2Q14168 576 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 LPIN1Q14693 890 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SWI5Q1ZZU3 235 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 KIF19Q2TAC6 998 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ACCSLQ4AC99 568 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 LACTB2Q53H82 288 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 EFHC1Q5JVL4 640 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 UBXN11Q5T124 520 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 HES5Q5TA89 166 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 C9orf131Q5VYM1 1079 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CDC73Q6P1J9 531 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 STOX1Q6ZVD7 989 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 LDHDQ86WU2 507 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SPARTQ8N0X7 666 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SH2D3CQ8N5H7 860 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 OR5J2Q8NH18 312 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TERB2Q8NHR7 220 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 KCNV2Q8TDN2 545 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ZKSCAN4Q969J2 545 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 CNDP2Q96KP4 475 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 BTBD9Q96Q07 612 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 S100A13Q99584 98 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 REEP2Q9BRK0 252 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BDH2Q9BUT1 245 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 L2HGDHQ9H9P8 463 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 GDPD2Q9HCC8 539 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 LRP2BPQ9P2M1 347 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CNOT7Q9UIV1 285 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 PYCARDQ9ULZ3 195 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 HPCAL4Q9UM19 191 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MAGED1Q9Y5V3 778 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 CLTCL1P53675 1640 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 LRRIQ1Q96JM4 1722 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PARP4Q9UKK3 1724 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 PIK3C2AO00443 1686 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EFCAB10A6NFE3 127 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 H0YJX3 145 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PSIP1O75475 530 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 DNAJB5O75953 348 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CD4P01730 458 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ETV5P41161 510 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MATKP42679 507 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 AK2P54819 239 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 GEMIN4P57678 1058 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 KCNB1Q14721 858 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRIP13Q15645 432 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 OASLQ15646 514 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 CCDC85BQ15834 202 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 SSX2Q16385 188 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 COLEC12Q5KU26 742 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MROH9Q5TGP6 573 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 LAYNQ6UX15 382 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TRIM72Q6ZMU5 477 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 FAM47EQ6ZV65 393 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RRAGAQ7L523 313 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RRM2BQ7LG56 351 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 GPIHBP1Q8IV16 184 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SLC44A2Q8IWA5 706 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.7□□□□□ -1.82
USP53-205ENST00000509769 OR8H2Q8N162 312 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MTURNQ8N3F0 131 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 KCNH5Q8NCM2 988 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DENND6BQ8NEG7 585 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MAGEE2Q8TD90 523 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 GIPC3Q8TF64 312 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CHAC2Q8WUX2 184 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DEPDC1BQ8WUY9 529 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RAPGEF5Q92565 580 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PROX1Q92786 737 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CLP1Q92989 425 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 CAVIN3Q969G5 261 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 Q96MT0 163 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TSSK1BQ9BXA7 367 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MCOLN1Q9GZU1 580 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF304Q9HCX3 659 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 AVENQ9NQS1 362 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 KCND1Q9NSA2 647 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SAGE1Q9NXZ1 904 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 UPB1Q9UBR1 384 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DNM3Q9UQ16 869 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PEX16Q9Y5Y5 336 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 FAM95CA0A1B0GW59 222 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 A0A1W2PQ72 361 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 C2orf71A6NGG8 1288 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 POC1B-GALNT4F8VUJ3 575 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RNF103O00237 685 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms