RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 GKN1Q9NS71 199 aa13.92□□□□□ -0.18
HMGCS1-205ENST00000508319 THG1LQ9NWX6 298 aaKnown RBP13.92□□□□□ -0.18
HMGCS1-205ENST00000508319 FAM13BQ9NYF5 915 aa13.92□□□□□ -0.18
HMGCS1-205ENST00000508319 NCDNQ9UBB6 729 aa13.92□□□□□ -0.18
HMGCS1-205ENST00000508319 MYO16Q9Y6X6 1858 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 PVALEFA0A1B0GWK0 134 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 ACTN4O43707 911 aaKnown RBP13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 KLRC4O43908 158 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 CST3P01034 146 aaPredicted RBP13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 TNNI1P19237 187 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 FOXK2Q01167 660 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 DMWDQ09019 674 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 USP4Q13107 963 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 ZNF77Q15935 545 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 VSTM1Q6UX27 236 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 ERMP1Q7Z2K6 904 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 SCN4BQ8IWT1 228 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 CCDC127Q96BQ5 260 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 FNBP1Q96RU3 617 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 CGNQ9P2M7 1197 aaKnown RBP13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 RCOR1Q9UKL0 485 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 KIAA1549LQ6ZVL6 1849 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 SPTBN2O15020 2390 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 ATG2BQ96BY7 2078 aa13.91□□□□□ -0.18
HMGCS1-205ENST00000508319 TACC1O75410 805 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 PDGFRBP09619 1106 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 ARSAP15289 507 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 BDNFP23560 247 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 FAM160A1Q05DH4 1040 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 RUNX3Q13761 415 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MTF1Q14872 753 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MAPRE1Q15691 268 aaKnown RBP13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 KNOP1Q1ED39 458 aaKnown RBP13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 PKN3Q6P5Z2 889 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 SYNPOQ8N3V7 929 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 KIAA0895Q8NCT3 520 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MYCBPAPQ8TBZ2 947 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 ZNF516Q92618 1163 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 PCED1BQ96HM7 432 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 SPATA17Q96L03 361 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MMS19Q96T76 1030 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MRPL45Q9BRJ2 306 aaKnown RBP13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 XYLT2Q9H1B5 865 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 TRPC7Q9HCX4 862 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 GCNT4Q9P109 453 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 MAGEC2Q9UBF1 373 aaPredicted RBP13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 SERTAD1Q9UHV2 236 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 CFAP45Q9UL16 551 aa13.9□□□□□ -0.18
HMGCS1-205ENST00000508319 SPAG17Q6Q759 2223 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TRAV19A0A0A6YYK7 116 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 C2orf78A6NCI8 922 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CHURC1-FNTBB4DL54 471 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TRDMT1O14717 391 aaKnown RBP13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 STAU1O95793 577 aaKnown RBP13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CKMP06732 381 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 SLFN14P0C7P3 912 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 HOXC13P31276 330 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 FNTBP49356 437 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CASP4P49662 377 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 USP46P62068 366 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TNNC1P63316 161 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CYP27A1Q02318 531 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 PDGFRLQ15198 375 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 LPAL2Q16609 132 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TMEM196Q5HYL7 178 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 MDH1BQ5I0G3 518 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 FSTL4Q6MZW2 842 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CC2D1AQ6P1N0 951 aaPredicted RBP13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CEP57L1Q8IYX8 460 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 SPRYD3Q8NCJ5 442 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 PLEKHO2Q8TD55 490 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CEP295NLQ96MC4 621 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 CYP2S1Q96SQ9 504 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TTLL2Q9BWV7 592 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 TMEM30AQ9NV96 361 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 DLL3Q9NYJ7 618 aa13.89□□□□□ -0.19
HMGCS1-205ENST00000508319 EXOC3O60645 756 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 USP17L7P0C7H9 530 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 PFKFB1P16118 471 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 TGM1P22735 817 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 GNL1P36915 607 aaPredicted RBP13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 GRIK1P39086 918 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 CACNA2D1P54289 1103 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 MYL6P60660 151 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 STK4Q13043 487 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 WDR72Q3MJ13 1102 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 TDRD10Q5VZ19 366 aaKnown RBP13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 NAIF1Q69YI7 327 aaPredicted RBP13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 LAIR1Q6GTX8 287 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 DENND5BQ6ZUT9 1274 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 LONP2Q86WA8 852 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 ARL14EPQ8N8R7 260 aaPredicted RBP13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 FSIP1Q8NA03 581 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 GOLGA5Q8TBA6 731 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 OSCP1Q8WVF1 389 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 SECISBP2LQ93073 1101 aaKnown RBP13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 PAGE5Q96GU1 130 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 CHAMP1Q96JM3 812 aa13.88□□□□□ -0.19
HMGCS1-205ENST00000508319 SNX25Q9H3E2 840 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms