RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 TCERG1LQ5VWI1 586 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 INTS8Q75QN2 995 aaKnown RBP13.06□□□□□ -0.32
UPF3A-210ENST00000493727 USP37Q86T82 979 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 CBWD2Q8IUF1 395 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 ZSWIM2Q8NEG5 633 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 TMEM174Q8WUU8 243 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 NANOS1Q8WY41 292 aaKnown RBP13.06□□□□□ -0.32
UPF3A-210ENST00000493727 RIN2Q8WYP3 895 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-210ENST00000493727 GPR62Q9BZJ7 368 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 RPF1Q9H9Y2 349 aaKnown RBP13.06□□□□□ -0.32
UPF3A-210ENST00000493727 GRPEL1Q9HAV7 217 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 PIDD1Q9HB75 910 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 TAB2Q9NYJ8 693 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.06□□□□□ -0.32
UPF3A-210ENST00000493727 KLK14Q9P0G3 267 aa13.06□□□□□ -0.32
UPF3A-210ENST00000493727 MIA3Q5JRA6 1907 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 MAPK13O15264 365 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 TGM5O43548 720 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 RECQL4O94761 1208 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 ADRB2P07550 413 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 CLTAP09496 248 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 ATP1A3P13637 1013 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 TEAD4Q15561 434 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 FILIP1LQ4L180 1135 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 ZBTB41Q5SVQ8 909 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 PALB2Q86YC2 1186 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 BRSK2Q8IWQ3 736 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 CEP120Q8N960 986 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 STK32AQ8WU08 396 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 RMDN1Q96DB5 314 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 ACAP3Q96P50 834 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 FNBP1Q96RU3 617 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 TTPALQ9BTX7 342 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 SEMA4AQ9H3S1 761 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 EPS15L1Q9UBC2 864 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 WNT16Q9UBV4 365 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 FBXL21Q9UKT6 434 aa13.05□□□□□ -0.32
UPF3A-210ENST00000493727 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.05□□□□□ -0.32
UPF3A-210ENST00000493727 MED19A0JLT2 244 aaPredicted RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 F8W810 466 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 CBFA2T2O43439 604 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 RFPL2O75678 378 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 LMNAP02545 664 aaKnown RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 F11P03951 625 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 TPM3P06753 285 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 DLATP10515 647 aaKnown RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 MSX1P28360 303 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 TNFSF9P41273 254 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 VAMP7P51809 220 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 FANCCQ00597 558 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 PPP2R3AQ06190 1150 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 CYP24A1Q07973 514 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 BFSP1Q12934 665 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 KRT31Q15323 416 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 MAN2A1Q16706 1144 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 LIN9Q5TKA1 542 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 LILRA6Q6PI73 481 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 IRF2BP1Q8IU81 584 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 RSAD2Q8WXG1 361 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 PIK3R5Q8WYR1 880 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 CCDC127Q96BQ5 260 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 TUBGCP2Q9BSJ2 902 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 HSD3B7Q9H2F3 369 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 MMRN2Q9H8L6 949 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 TOPORSQ9NS56 1045 aaPredicted RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 SNTG2Q9NY99 539 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 LIMA1Q9UHB6 759 aaKnown RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 CPSF3Q9UKF6 684 aaKnown RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 ZFP37Q9Y6Q3 630 aaPredicted RBP13.04□□□□□ -0.32
UPF3A-210ENST00000493727 PATJQ8NI35 1801 aa13.04□□□□□ -0.32
UPF3A-210ENST00000493727 KMT2BQ9UMN6 2715 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 CASTOR2A6NHX0 329 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 PTGESO14684 152 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 STX10O60499 249 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 IL18RAPO95256 599 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 HNRNPA1P09651 372 aaKnown RBP eCLIP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 TRIM49P0CI25 452 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 TRIM49CP0CI26 452 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 CXCL8P10145 99 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 COPB1P53618 953 aaKnown RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 MARSP56192 900 aaKnown RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 POU5F1Q01860 360 aaKnown RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 PSMD6Q15008 389 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 SURF1Q15526 300 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 ENOX2Q16206 610 aaKnown RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 FAM171A1Q5VUB5 890 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 CRELD2Q6UXH1 353 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 GLYCTKQ8IVS8 523 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 ZNF707Q96C28 371 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-210ENST00000493727 B3GALT6Q96L58 329 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 UROC1Q96N76 676 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 HINFPQ9BQA5 517 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 TRIM5Q9C035 493 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 VPS16Q9H269 839 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 DLGAP2Q9P1A6 1054 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
UPF3A-210ENST00000493727 ZFHX4Q86UP3 3567 aa13.02□□□□□ -0.32
UPF3A-210ENST00000493727 TMEM189-UBE2V1I3L0A0 370 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 FAM189A1O60320 539 aa13.02□□□□□ -0.33
UPF3A-210ENST00000493727 CLSTN1O94985 981 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms