RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 KIAA1257Q9ULG3 409 aa16.7■□□□□ 0.26
HPS4-216ENST00000493455 MYO6Q9UM54 1294 aa16.7■□□□□ 0.26
HPS4-216ENST00000493455 TRANK1O15050 2925 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 MYO16Q9Y6X6 1858 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 O00370 1275 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 MMEP08473 750 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 HAPLN1P10915 354 aaPredicted RBP16.69■□□□□ 0.26
HPS4-216ENST00000493455 ANXA13P27216 316 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 TWF1Q12792 350 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 SMARCB1Q12824 385 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 PPM1LQ5SGD2 360 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 ARHGAP17Q68EM7 881 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 DENND1BQ6P3S1 775 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 PAQR9Q6ZVX9 377 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 EPS8L1Q8TE68 723 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 GIPC2Q8TF65 315 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 C2orf15Q8WU43 125 aaKnown RBP16.69■□□□□ 0.26
HPS4-216ENST00000493455 CDCA3Q99618 268 aaPredicted RBP16.69■□□□□ 0.26
HPS4-216ENST00000493455 NUCKS1Q9H1E3 243 aaKnown RBP16.69■□□□□ 0.26
HPS4-216ENST00000493455 HAUS4Q9H6D7 363 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 ABHD10Q9NUJ1 306 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 ZNHIT6Q9NWK9 470 aaKnown RBP16.69■□□□□ 0.26
HPS4-216ENST00000493455 CLDND1Q9NY35 253 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.69■□□□□ 0.26
HPS4-216ENST00000493455 YIPF1Q9Y548 306 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 INSL5Q9Y5Q6 135 aa16.69■□□□□ 0.26
HPS4-216ENST00000493455 F8VP50 259 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 CCL16O15467 120 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 BEST1O76090 585 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 LRG1P02750 347 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 SRGAP2BP0DMP2 458 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 ALDH1A3P47895 512 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 STILQ15468 1287 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 LILRA6Q6PI73 481 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 ELMSAN1Q6PJG2 1045 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 CCDC149Q6ZUS6 474 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 TTC30AQ86WT1 665 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 FMNL3Q8IVF7 1028 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 C12orf76Q8N812 135 aaPredicted RBP16.68■□□□□ 0.26
HPS4-216ENST00000493455 VN1R2Q8NFZ6 395 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 OR8K1Q8NGG5 319 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 SECISBP2LQ93073 1101 aaKnown RBP16.68■□□□□ 0.26
HPS4-216ENST00000493455 FUBP3Q96I24 572 aaKnown RBP eCLIP16.68■□□□□ 0.26
HPS4-216ENST00000493455 KCNK16Q96T55 309 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 SMOQ99835 787 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 MTMR10Q9NXD2 777 aa16.68■□□□□ 0.26
HPS4-216ENST00000493455 PIK3R2O00459 728 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 RFPL2O75678 378 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 PLEKP08567 350 aaPredicted RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 NPR3P17342 541 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 TNFAIP3P21580 790 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 TUFMP49411 452 aaKnown RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 RGS7P49802 495 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 BCAT1P54687 386 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 SLC8A3P57103 927 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 PDE4CQ08493 712 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 BST2Q10589 180 aaKnown RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 ARID5BQ14865 1188 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 CNGA2Q16280 664 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 TAF12Q16514 161 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 CFAP221Q4G0U5 840 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 LCLAT1Q6UWP7 414 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 CLEC20AQ6ZU45 233 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 IRF2BP2Q7Z5L9 587 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 TCEAL8Q8IYN2 117 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 EFHBQ8N7U6 833 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 C1orf131Q8NDD1 294 aaKnown RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 CASP10Q92851 521 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 AGPAT1Q99943 283 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.67■□□□□ 0.26
HPS4-216ENST00000493455 DUSP16Q9BY84 665 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 ABCB6Q9NP58 842 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 DMAP1Q9NPF5 467 aaPredicted RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 TMEM30AQ9NV96 361 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 AIPL1Q9NZN9 384 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 NOCTQ9UK39 431 aaKnown RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 MAGED2Q9UNF1 606 aaPredicted RBP16.67■□□□□ 0.26
HPS4-216ENST00000493455 CEP83Q9Y592 693 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 PATJQ8NI35 1801 aa16.67■□□□□ 0.26
HPS4-216ENST00000493455 TULP2O00295 520 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 TRIM66O15016 1216 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 GLP2RO95838 553 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 SERPING1P05155 500 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 PTMAP06454 111 aaKnown RBP16.66■□□□□ 0.26
HPS4-216ENST00000493455 ATF6P18850 670 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 EPHB3P54753 998 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 RPL10AP62906 217 aaKnown RBP16.66■□□□□ 0.26
HPS4-216ENST00000493455 CDR2Q01850 454 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 CLUL1Q15846 466 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 RARS2Q5T160 578 aaKnown RBP16.66■□□□□ 0.26
HPS4-216ENST00000493455 VSTM1Q6UX27 236 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 TC2NQ8N9U0 490 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 ANKRD52Q8NB46 1076 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 DNAJC7Q99615 494 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 DEF6Q9H4E7 631 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 PLEKHA4Q9H4M7 779 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 ST7Q9NRC1 585 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 IMPACTQ9P2X3 320 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 DPP7Q9UHL4 492 aa16.66■□□□□ 0.26
HPS4-216ENST00000493455 GREB1Q4ZG55 1949 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms