RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LMO2P25791 158 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 MAGEA11P43364 429 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 RAP1GAPP47736 663 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 PSMC1P62191 440 aaKnown RBP13.28□□□□□ -0.28
CPSF3-204ENST00000489403 SLC39A14Q15043 492 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 SF3A2Q15428 464 aaKnown RBP13.28□□□□□ -0.28
CPSF3-204ENST00000489403 FBXO43Q4G163 708 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 DPH6Q7L8W6 267 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 CACNA2D4Q7Z3S7 1137 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 KBTBD6Q86V97 674 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 CBWD2Q8IUF1 395 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 CCDC65Q8IXS2 484 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 CPA6Q8N4T0 437 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 PDILTQ8N807 584 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 ARL14EPQ8N8R7 260 aaPredicted RBP13.28□□□□□ -0.28
CPSF3-204ENST00000489403 TTC16Q8NEE8 873 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 RPLP0P6Q8NHW5 317 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 EZH1Q92800 747 aaPredicted RBP13.28□□□□□ -0.28
CPSF3-204ENST00000489403 ATP2A3Q93084 1043 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 HPS3Q969F9 1004 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 LOXL4Q96JB6 756 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 HHIPQ96QV1 700 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 SYT15Q9BQS2 421 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 INTS13Q9NVM9 706 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 GCNT4Q9P109 453 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 CDH9Q9ULB4 789 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 MTMR6Q9Y217 621 aa13.28□□□□□ -0.28
CPSF3-204ENST00000489403 TNNC2P02585 160 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 CENPBP07199 599 aaPredicted RBP13.27□□□□□ -0.29
CPSF3-204ENST00000489403 TCF3P15923 654 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 IFNAR2P48551 515 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 MYO1EQ12965 1108 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 EML3Q32P44 896 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 AASDHQ4L235 1098 aaPredicted RBP13.27□□□□□ -0.29
CPSF3-204ENST00000489403 C4orf50Q6ZRC1 276 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 CAMKK1Q8N5S9 505 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 FSIP1Q8NA03 581 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 SH3RF2Q8TEC5 729 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 CD101Q93033 1021 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 MYLPFQ96A32 169 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 HPDLQ96IR7 371 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 TNMDQ9H2S6 317 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 CRTAC1Q9NQ79 661 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 RXFP3Q9NSD7 469 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 HSPBP1Q9NZL4 362 aa13.27□□□□□ -0.29
CPSF3-204ENST00000489403 MAGEC2Q9UBF1 373 aaPredicted RBP13.27□□□□□ -0.29
CPSF3-204ENST00000489403 ZNF233A6NK53 670 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 AKAP3O75969 853 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 ZNF806P0C7X5 589 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 BDNFP23560 247 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 HOXD13P35453 343 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 NASPP49321 788 aaPredicted RBP13.26□□□□□ -0.29
CPSF3-204ENST00000489403 LIMK1P53667 647 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 ZXDBP98169 803 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 KCNB1Q14721 858 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 SURF1Q15526 300 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 E2F4Q16254 413 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 DUOXA2Q1HG44 320 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 PLA2G2CQ5R387 149 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 VSTM1Q6UX27 236 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 SYT13Q7L8C5 426 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 WDR49Q8IV35 697 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 C12orf50Q8NA57 414 aaPredicted RBP13.26□□□□□ -0.29
CPSF3-204ENST00000489403 LINC00301Q8NCQ3 95 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 EXOC4Q96A65 974 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 ZC3H10Q96K80 434 aaKnown RBP13.26□□□□□ -0.29
CPSF3-204ENST00000489403 SPATA17Q96L03 361 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 TRIM9Q9C026 710 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 SMOC1Q9H4F8 434 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 ZSCAN16Q9H4T2 348 aaPredicted RBP13.26□□□□□ -0.29
CPSF3-204ENST00000489403 KBTBD4Q9NVX7 518 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 ARHGAP26Q9UNA1 814 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 R3HCC1Q9Y3T6 440 aaKnown RBP13.26□□□□□ -0.29
CPSF3-204ENST00000489403 NME7Q9Y5B8 376 aa13.26□□□□□ -0.29
CPSF3-204ENST00000489403 EIF3DO15371 548 aaKnown RBP eCLIP13.25□□□□□ -0.29
CPSF3-204ENST00000489403 PDGFRBP09619 1106 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 HDCP19113 662 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 WARSP23381 471 aaKnown RBP13.25□□□□□ -0.29
CPSF3-204ENST00000489403 GRIK1P39086 918 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 USP46P62068 366 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 CYP27A1Q02318 531 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 DMC1Q14565 340 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 PLK5Q496M5 336 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 IL31Q6EBC2 164 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 STXBP4Q6ZWJ1 553 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 TRAPPC11Q7Z392 1133 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 DDX1Q92499 740 aaKnown RBP13.25□□□□□ -0.29
CPSF3-204ENST00000489403 ACDQ96AP0 544 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 PCED1BQ96HM7 432 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 INTS4Q96HW7 963 aaKnown RBP13.25□□□□□ -0.29
CPSF3-204ENST00000489403 MMS19Q96T76 1030 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 DUSP15Q9H1R2 295 aaPredicted RBP13.25□□□□□ -0.29
CPSF3-204ENST00000489403 LINC00597Q9H2U6 94 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 PCDHGA5Q9Y5G8 931 aa13.25□□□□□ -0.29
CPSF3-204ENST00000489403 SPTBN2O15020 2390 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 TM4SF5O14894 197 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 TRIM66O15016 1216 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 TGFB1I1O43294 461 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 STX6O43752 255 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 KRT37O76014 449 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms