RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ZNF606Q8WXB4 792 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ATP6V1E2Q96A05 226 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ERP27Q96DN0 273 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 KCTD10Q9H3F6 313 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ACP6Q9NPH0 428 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 XPNPEP3Q9NQH7 507 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 NDE1Q9NXR1 346 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 DCTN4Q9UJW0 460 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 C15orf41Q9Y2V0 281 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 RIPK3Q9Y572 518 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 NID2Q14112 1375 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ACKR2O00590 384 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 B3GAT3O94766 335 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MAP3K6O95382 1288 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 FNTAP49354 379 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 CENPCQ03188 943 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PDE1CQ14123 709 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 HYIQ5T013 277 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 CRLF3Q8IUI8 442 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 CD302Q8IX05 232 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM161BQ8NDZ6 487 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ASAP3Q8TDY4 903 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TEKT4Q8WW24 435 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MTG1Q9BT17 334 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 GDF3Q9NR23 364 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 RGPD2P0DJD1 1756 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PLA2G6O60733 806 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 NCF2P19878 526 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PNPLA4P41247 253 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MAGEA4P43358 317 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 AP2B1P63010 937 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 GTF2BQ00403 316 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 GCNT1Q02742 428 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PTPN11Q06124 597 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 UGCGQ16739 394 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ZNF662Q6ZS27 426 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 KDELC2Q7Z4H8 507 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 NOP9Q86U38 636 aaKnown RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 FAM71DQ8N9W8 422 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 CLMNQ96JQ2 1002 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PORCNQ9H237 461 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TRABDQ9H4I3 376 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TRPC7Q9HCX4 862 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ALG13Q9NP73 1137 aaKnown RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 XPO7Q9UIA9 1087 aaKnown RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MOSPD1Q9UJG1 213 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MID2Q9UJV3 735 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PDE2AO00408 941 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PROSCO94903 275 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PAMP19021 973 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 PTGER2P43116 358 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ARFIP2P53365 341 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TMED1Q13445 227 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 BOLA3Q53S33 107 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 LONP2Q86WA8 852 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 SHCBP1Q8NEM2 672 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 EXT2Q93063 718 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TRIM56Q9BRZ2 755 aaKnown RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 CHMP2BQ9UQN3 213 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ZSCAN5CA6NGD5 496 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 TGFB1I1O43294 461 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SHOX2O60902 331 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SNUPNO95149 360 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 ADRB2P07550 413 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 FAM200BP0CF97 657 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 MYBL2P10244 700 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SP3Q02447 781 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SNX17Q15036 470 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 MGAT5BQ3V5L5 792 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 EFHC1Q5JVL4 640 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 BRSK2Q8IWQ3 736 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 MCOLN2Q8IZK6 566 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 BAP1Q92560 729 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SEPT5Q99719 369 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 PPARGC1AQ9UBK2 798 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 ASTN2O75129 1339 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 RCCD1A6NED2 376 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 O00370 1275 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 PJA2O43164 708 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 PSTPIP1O43586 416 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 KCNA3P22001 575 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 GLRA2P23416 452 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 CDH8P55286 799 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 GRAMD1BQ3KR37 738 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 EIF1ADQ8N9N8 165 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 ATXN7L3BQ96GX2 97 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 YME1L1Q96TA2 773 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SP110Q9HB58 689 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SNTG2Q9NY99 539 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 DLGAP2Q9P1A6 1054 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 CCDC195A0A1B0GUA6 201 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 HSPA4LO95757 839 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 FAM153BP0C7A2 387 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 FAM153CQ494X1 144 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 PAN2Q504Q3 1202 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 WDR75Q8IWA0 830 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 C4orf33Q8N1A6 199 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 OR6P1Q8NGX9 317 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms