RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	DENND5B	Q6ZUT9	1274 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	CCDC186	Q7Z3E2	898 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	RBM23	Q86U06	439 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	FAM35A	Q86V20	835 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	LRRTM3	Q86VH5	581 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	OSTM1	Q86WC4	334 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	ZDHHC17	Q8IUH5	632 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	DHX40	Q8IX18	779 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	UBALD2	Q8IYN6	164 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	FAM71A	Q8IYT1	594 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	FUK	Q8N0W3	1084 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	SLC4A11	Q8NBS3	891 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	OR6B3	Q8NGW1	331 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	DEPDC1B	Q8WUY9	529 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	AUTS2	Q8WXX7	1259 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	RABGGTA	Q92696	567 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	SYN2	Q92777	582 aa	Predicted RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	B3GALT6	Q96L58	329 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	HSFY1	Q96LI6	401 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	ZNF512	Q96ME7	567 aa	Predicted RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	MRPL45	Q9BRJ2	306 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	NUP58	Q9BVL2	599 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	DUSP16	Q9BY84	665 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	STK33	Q9BYT3	514 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	MIS12	Q9H081	205 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	INTS2	Q9H0H0	1204 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	DNAJC25	Q9H1X3	360 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	LHX5	Q9H2C1	402 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	SMYD3	Q9H7B4	428 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	CYP4F11	Q9HBI6	524 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	RTN4	Q9NQC3	1192 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	SAMSN1	Q9NSI8	373 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	FANCL	Q9NW38	375 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	CLIC5	Q9NZA1	410 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	NXF1	Q9UBU9	619 aa	Known RBP	5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	GTF3C4	Q9UKN8	822 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	CDH7	Q9ULB5	785 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	SIK3	Q9Y2K2	1263 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	PCDHGC5	Q9Y5F6	944 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	USP3	Q9Y6I4	520 aa		5.4	□□□□□ -1.54
HDAC6-223	ENST00000480525	TECTA	O75443	2155 aa		5.4	□□□□□ -1.55
HDAC6-223	ENST00000480525	TRIO	O75962	3097 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525		A0A1W2PQJ5	194 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	SYCE3	A1L190	88 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	MYBPHL	A2RUH7	354 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	BECN2	A8MW95	431 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	XPO1	O14980	1071 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	GFPT2	O94808	682 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	FBXO21	O94952	628 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	F11	P03951	625 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	RHO	P08100	348 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	GLI1	P08151	1106 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	FAM200B	P0CF97	657 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	LAMP2	P13473	410 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	ALAD	P13716	330 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	RPL17	P18621	184 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	LMO2	P25791	158 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PBX1	P40424	430 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	ACADSB	P45954	432 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	COPB1	P53618	953 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	STX17	P56962	302 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	JAM2	P57087	298 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PLCB2	Q00722	1185 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	FCHO2	Q0JRZ9	810 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	BST2	Q10589	180 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	TWF1	Q12792	350 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	TRIM14	Q14142	442 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	SKIV2L	Q15477	1246 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	FILIP1L	Q4L180	1135 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	SGO2	Q562F6	1265 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	KLHDC7A	Q5VTJ3	777 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	ISM2	Q6H9L7	571 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PHLDB3	Q6NSJ2	640 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	TRIM72	Q6ZMU5	477 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	CLEC20A	Q6ZU45	233 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PAQR9	Q6ZVX9	377 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PDZD4	Q76G19	769 aa	Predicted RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	BMP8A	Q7Z5Y6	402 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	TADA2B	Q86TJ2	420 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	MON1A	Q86VX9	555 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	DDX42	Q86XP3	938 aa	Known RBP eCLIP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PALB2	Q86YC2	1186 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	DRC7	Q8IY82	874 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	NUP93	Q8N1F7	819 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	ARHGAP18	Q8N392	663 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	PPM1K	Q8N3J5	372 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	TDRD5	Q8NAT2	981 aa	Known RBP	5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	IRGQ	Q8WZA9	623 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	DNASE1L2	Q92874	299 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	MYLPF	Q96A32	169 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	ELSPBP1	Q96BH3	223 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	OTUB2	Q96DC9	234 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	CYFIP2	Q96F07	1278 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLITRK1	Q96PX8	696 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	GCNA	Q96QF7	691 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	IER2	Q9BTL4	223 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	SDCBP2	Q9H190	292 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	CRISPLD1	Q9H336	500 aa		5.39	□□□□□ -1.55
HDAC6-223	ENST00000480525	POMK	Q9H5K3	350 aa		5.39	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms