RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 MMP13P45452 471 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 ARSEP51690 589 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 MAP2K5Q13163 448 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 CCL14Q16627 93 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 HADHQ16836 314 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 SH3PXD2AQ5TCZ1 1133 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 CST9Q5W186 159 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 TRNP1Q6NT89 227 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 BBOF1Q8ND07 529 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 ZNF473Q8WTR7 871 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 TMEM40Q8WWA1 233 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 FAM107BQ9H098 131 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 PLEKHA5Q9HAU0 1116 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 RRAGCQ9HB90 399 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 NINJ2Q9NZG7 142 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 GJD2Q9UKL4 321 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 DRG1Q9Y295 367 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 SMIM35A0A1B0GVV1 85 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 SRRM3A6NNA2 597 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 TULP2O00295 520 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 IGF2BP3O00425 579 aaKnown RBP eCLIP13.67□□□□□ -0.22
SEC13-216ENST00000479868 FAM107AO95990 144 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 ZNF865P0CJ78 1059 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 DARSP14868 501 aaKnown RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 MIPP30301 263 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 ZBTB6Q15916 424 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 RAB6CQ53S08 254 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 PPP1R26Q5T8A7 1209 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 MFSD5Q6N075 450 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 NOTUMQ6P988 496 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 CROCCP2Q86T23 111 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 DNAJB3Q8WWF6 145 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 NKD2Q969F2 451 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 ROPN1BQ9BZX4 212 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 RAB6CQ9H0N0 254 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 CNOT10Q9H9A5 744 aaKnown RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 ROPN1Q9HAT0 212 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 MYO1CO00159 1063 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 DNALI1O14645 258 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 CST8O60676 142 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 AKAP5P24588 427 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 ZNF200P98182 395 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 PLCB3Q01970 1234 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 GPS1Q13098 491 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 MFSD10Q14728 455 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 GOLGA7BQ2TAP0 167 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 CCDC38Q502W7 563 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 FAM183BPQ6ZVS7 135 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 ACOT1Q86TX2 421 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 SLC35B2Q8TB61 432 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 ACTL9Q8TC94 416 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 C9orf72Q96LT7 481 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 PEBP4Q96S96 227 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 SELENOSQ9BQE4 189 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 APOL6Q9BWW8 343 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 FAM124BQ9H5Z6 455 aaPredicted RBP13.67□□□□□ -0.22
SEC13-216ENST00000479868 C10orf88Q9H8K7 445 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 FAM49BQ9NUQ9 324 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 USP18Q9UMW8 372 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 DERAQ9Y315 318 aa13.67□□□□□ -0.22
SEC13-216ENST00000479868 PDCD11Q14690 1871 aaKnown RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 GMNCA6NCL1 334 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 TREHO43280 583 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 GRAP2O75791 330 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 RECQL4O94761 1208 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 ITGAVP06756 1048 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 CHN1P15882 459 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 RGS7P49802 495 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 YARSP54577 528 aaKnown RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 ADAM17P78536 824 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 OTUD4Q01804 1114 aaKnown RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 TAZQ16635 292 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 OR6B2Q6IFH4 312 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 ALKAL1Q6UXT8 129 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 TTC30AQ86WT1 665 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 ZCCHC9Q8N567 271 aaKnown RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 TTC39CQ8N584 583 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 CCHCR1Q8TD31 782 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 HSPH1Q92598 858 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 RBM15Q96T37 977 aaKnown RBP eCLIP13.66□□□□□ -0.22
SEC13-216ENST00000479868 CTNNAL1Q9UBT7 734 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 KIAA1257Q9ULG3 409 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 EFR3BQ9Y2G0 817 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 SGK1O00141 431 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 RNF8O76064 485 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 TRUB2O95900 331 aaKnown RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 IFNB1P01574 187 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 ZNF143P52747 638 aaPredicted RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 CDC42EP1Q00587 391 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 BEX3Q00994 111 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 C15orf59Q2T9L4 293 aaPredicted RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 PMF1Q6P1K2 205 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 BBS12Q6ZW61 710 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 KCTD6Q8NC69 237 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 CMASQ8NFW8 434 aaPredicted RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 LPIN3Q9BQK8 851 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 TRIM6Q9C030 488 aaPredicted RBP13.66□□□□□ -0.22
SEC13-216ENST00000479868 CNTN3Q9P232 1028 aa13.66□□□□□ -0.22
SEC13-216ENST00000479868 C2CD4BA6NLJ0 364 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms