RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SLC5A4Q9NY91 659 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 ZHX2Q9Y6X8 837 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 HIRAP54198 1017 aaPredicted RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 MORF4L2Q15014 288 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 SLC45A4Q5BKX6 768 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 EFHC1Q5JVL4 640 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 UBA3Q8TBC4 463 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 INPP5DQ92835 1189 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 POLR3CQ9BUI4 534 aaPredicted RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 SLC12A4Q9UP95 1085 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 STARD13Q9Y3M8 1113 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 DNALI1O14645 258 aaPredicted RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 TPBGLP0DKB5 382 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 KBTBD12Q3ZCT8 623 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 CLNKQ7Z7G1 428 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 MYLK4Q86YV6 388 aaPredicted RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 SRPK1Q96SB4 655 aaKnown RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 AK5Q9Y6K8 562 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 KBTBD13C9JR72 458 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 AKAP10O43572 662 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 EDF1O60869 148 aaKnown RBP14.08□□□□□ -0.15
USP42-206ENST00000479544 SHROOM1Q2M3G4 852 aaPredicted RBP14.08□□□□□ -0.15
USP42-206ENST00000479544 RIPOR1Q6ZS17 1223 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 DENND5BQ6ZUT9 1274 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 ENOSF1Q7L5Y1 443 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 EZH1Q92800 747 aaPredicted RBP14.08□□□□□ -0.15
USP42-206ENST00000479544 SIKE1Q9BRV8 207 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 ING2Q9H160 280 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 ASCC2Q9H1I8 757 aaPredicted RBP14.08□□□□□ -0.15
USP42-206ENST00000479544 OLFML3Q9NRN5 406 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 ASNSD1Q9NWL6 643 aa14.08□□□□□ -0.15
USP42-206ENST00000479544 MED7O43513 233 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 C1QTNF8P60827 252 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 FASTKD1Q53R41 847 aaKnown RBP14.08□□□□□ -0.16
USP42-206ENST00000479544 TRIM67Q6ZTA4 783 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 PID1Q7Z2X4 250 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 GSTCDQ8NEC7 633 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 MCPH1Q8NEM0 835 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 KCNK16Q96T55 309 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 MED10Q9BTT4 135 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP42-206ENST00000479544 SDC4P31431 198 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 PDK4Q16654 411 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 DCAF12L1Q5VU92 463 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 LPCAT4Q643R3 524 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP42-206ENST00000479544 TAGLN3Q9UI15 199 aa14.08□□□□□ -0.16
USP42-206ENST00000479544 GNGT2O14610 69 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 DCXO43602 365 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PYGLP06737 847 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 RAG1P15918 1043 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ABCG1P45844 678 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ACTR2P61160 394 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 TRMT5Q32P41 509 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 TRABD2AQ86V40 505 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PPP2R3CQ969Q6 453 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 CMTM5Q96DZ9 223 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 CEP41Q9BYV8 373 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 KLHL4Q9C0H6 718 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 NMUR2Q9GZQ4 415 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 DDX4Q9NQI0 724 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 NRBP2Q9NSY0 501 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 DDX56Q9NY93 547 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 TBX20Q9UMR3 447 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ALS2Q96Q42 1657 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PSAPP07602 524 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 SMARCA1P28370 1054 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 TPP2P29144 1249 aaPredicted RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 CDK16Q00536 496 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 C16orf72Q14CZ0 275 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 VSTM1Q6UX27 236 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 TRIM72Q6ZMU5 477 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 SPOCD1Q6ZMY3 1216 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 OR6B3Q8NGW1 331 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 DIS3LQ8TF46 1054 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 FAXDC2Q96IV6 333 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 GORASP1Q9BQQ3 440 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 SYT15Q9BQS2 421 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 FOXP3Q9BZS1 431 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ZDHHC18Q9NUE0 388 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 BRWD3Q6RI45 1802 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PAEPP09466 180 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 GLRBP48167 497 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PKNOX1P55347 436 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 WDR4P57081 412 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 UBAP2LQ14157 1087 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 CLEC16AQ2KHT3 1053 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 SLC35G1Q2M3R5 365 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 TFDP3Q5H9I0 405 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ANO7Q6IWH7 933 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ZNF572Q7Z3I7 529 aaPredicted RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 RNF169Q8NCN4 708 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ZSCAN18Q8TBC5 510 aaPredicted RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 ZNF384Q8TF68 577 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 EBF2Q9HAK2 575 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 GSC2O15499 205 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 NPR1P16066 1061 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 CCNFP41002 786 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 RPL7AP62424 266 aaKnown RBP14.07□□□□□ -0.16
USP42-206ENST00000479544 CWF19L1Q69YN2 538 aaKnown RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms