RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RTKNQ9BST9 563 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TTYH3Q9C0H2 523 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 RASSF1Q9NS23 344 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TMOD4Q9NZQ9 345 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 VSX1Q9NZR4 365 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 LPAR3Q9UBY5 353 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 CDYLQ9Y232 598 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 NEU2Q9Y3R4 380 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 RAD54BQ9Y620 910 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 CCDC195A0A1B0GUA6 201 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 FCHO1O14526 889 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 VPS4BO75351 444 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 PIAS2O75928 621 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 FARP2O94887 1054 aaPredicted RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 ARP10275 920 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 KCNA3P22001 575 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 GCLCP48506 637 aaPredicted RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 PAPOLAP51003 745 aaKnown RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 ZNF134P52741 427 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 AP2B1P63010 937 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 FOXD4Q12950 439 aaPredicted RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 ATP1A4Q13733 1029 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 KCNAB1Q14722 419 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 ELAVL1Q15717 326 aaKnown RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 KCNA10Q16322 511 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SLFN13Q68D06 897 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 MAATS1Q7Z4T9 603 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 KCTD20Q7Z5Y7 419 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SIAH1Q8IUQ4 282 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 CPOQ8IVL8 374 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 CCDC117Q8IWD4 279 aaPredicted RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 ELOA2Q8IYF1 753 aaPredicted RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 NRSN1Q8IZ57 195 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 BPIFB1Q8TDL5 484 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 RUBCNQ92622 972 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 MARS2Q96GW9 593 aaKnown RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 MED15Q96RN5 788 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SEC62Q99442 399 aaKnown RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 NEU1Q99519 415 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 REXO4Q9GZR2 422 aaKnown RBP5.96□□□□□ -1.46
UPF3B-203ENST00000478840 RIC8AQ9NPQ8 531 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 PLA2G3Q9NZ20 509 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 CTTNBP2NLQ9P2B4 639 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 FEM1BQ9UK73 627 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 HPSEQ9Y251 543 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SH3BP1Q9Y3L3 701 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SLC30A1Q9Y6M5 507 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 SPATA31A3Q5VYP0 1347 aa5.96□□□□□ -1.46
UPF3B-203ENST00000478840 TISP43B9A030 160 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 ANXA6P08133 673 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 PPIFP30405 207 aaKnown RBP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 PXNP49023 591 aaPredicted RBP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 ALDH18A1P54886 795 aaKnown RBP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 EIF5P55010 431 aaKnown RBP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 LILRA4P59901 499 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 MYO1EQ12965 1108 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 G3BP1Q13283 466 aaKnown RBP eCLIP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 C1QL3Q5VWW1 255 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 C1orf122Q6ZSJ8 110 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 RSRC2Q7L4I2 434 aaKnown RBP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 TAX1BP1Q86VP1 789 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 C2CD5Q86YS7 1000 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 OR6Y1Q8NGX8 325 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 SCAMP5Q8TAC9 235 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 RILPL2Q969X0 211 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 TMEM176AQ96HP8 235 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 LRRC37BQ96QE4 947 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 PTDSS2Q9BVG9 487 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 SLC25A32Q9H2D1 315 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 UBN1Q9NPG3 1134 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 VPS51Q9UID3 782 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.95□□□□□ -1.46
UPF3B-203ENST00000478840 ITIH6Q6UXX5 1313 aa5.95□□□□□ -1.46
UPF3B-203ENST00000478840 CD3EAPO15446 510 aaKnown RBP5.94□□□□□ -1.46
UPF3B-203ENST00000478840 DNPH1O43598 174 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 CCNT2O60583 730 aaKnown RBP5.94□□□□□ -1.46
UPF3B-203ENST00000478840 RAD17O75943 681 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 VIPP01282 170 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 TK1P04183 234 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 PRKCBP05771 671 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 POLBP06746 335 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 GYS1P13807 737 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 KCNC1P48547 511 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 CDK7P50613 346 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 VAMP2P63027 116 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 KRT17Q04695 432 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 SCAPQ12770 1279 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 CACHD1Q5VU97 1274 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 ABLIM2Q6H8Q1 611 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 OGFOD2Q6N063 350 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 LAYNQ6UX15 382 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 KRTAP19-1Q8IUB9 90 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 RASGRP3Q8IV61 690 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 ESX1Q8N693 406 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 Q8NA96 180 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 ZNF483Q8TF39 744 aaPredicted RBP5.94□□□□□ -1.46
UPF3B-203ENST00000478840 MIEF2Q96C03 454 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 NUDT22Q9BRQ3 303 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 GOLGA2P5Q9HBQ8 144 aa5.94□□□□□ -1.46
UPF3B-203ENST00000478840 IFT80Q9P2H3 777 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms