RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TRAPPC12Q8WVT3 735 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 OPTNQ96CV9 577 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 POLIQ9UNA4 740 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 H3BRB1 525 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 NUDT17P0C025 328 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 SCTRP47872 440 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 CAPSQ13938 189 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 GLRA4Q5JXX5 417 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 BTBD8Q5XKL5 378 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 LRRC6Q86X45 466 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 PHF13Q86YI8 300 aaPredicted RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MCUQ8NE86 351 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 TUT1Q9H6E5 874 aaKnown RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 G3BP2Q9UN86 482 aaKnown RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 AFG3L2Q9Y4W6 797 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 O00370 1275 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 FSCN2O14926 492 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 TAF1CQ15572 869 aaPredicted RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 KIZQ2M2Z5 673 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 LRRC38Q5VT99 294 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MTHFD1LQ6UB35 978 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 ABHD15Q6UXT9 468 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 EPS15L1Q9UBC2 864 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 DNPEPQ9ULA0 475 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MTO1Q9Y2Z2 717 aaKnown RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 OPHN1O60890 802 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 DDNO94850 711 aaPredicted RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 GJB6O95452 261 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 SETSIPP0DME0 302 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MAP7Q14244 749 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 PHTF1Q9UMS5 762 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MYH6P13533 1939 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 ATP9BO43861 1147 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 CSDE1O75534 798 aaKnown RBP15.25■□□□□ 0.03
HDAC6-220ENST00000477528 ART3Q13508 389 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 SCG3Q8WXD2 468 aaKnown RBP15.25■□□□□ 0.03
HDAC6-220ENST00000477528 ART4Q93070 314 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 PCMTD2Q9NV79 361 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 GPRC5DQ9NZD1 345 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 NOVP48745 357 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 NOMO3P69849 1222 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 STX3Q13277 289 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 AGAP3Q96P47 875 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 NUF2Q9BZD4 464 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 FIS1Q9Y3D6 152 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 TRIM49D1C9J1S8 452 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 NOL3O60936 208 aaKnown RBP15.25■□□□□ 0.03
HDAC6-220ENST00000477528 PECAM1P16284 738 aaPredicted RBP15.25■□□□□ 0.03
HDAC6-220ENST00000477528 BCAT1P54687 386 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 ACAD11Q709F0 780 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 CENPTQ96BT3 561 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 PAFAH2Q99487 392 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 SH3GL2Q99962 352 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 TRIM33Q9UPN9 1127 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 RIPK3Q9Y572 518 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 ADAMTS7Q9UKP4 1686 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 UBR2Q8IWV8 1755 aa15.25■□□□□ 0.03
HDAC6-220ENST00000477528 LACTBL1A8MY62 500 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 F8VP50 259 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 DIAPH2O60879 1101 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 GCKP35557 465 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 CPT1AP50416 773 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 PAPOLAP51003 745 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 ACAP1Q15027 740 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 SMAD1Q15797 465 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 CELF3Q5SZQ8 465 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 SIAH1Q8IUQ4 282 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 ZCCHC9Q8N567 271 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 TFB1MQ8WVM0 346 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 TRIM56Q9BRZ2 755 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 TJP1Q07157 1748 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 MARF1Q9Y4F3 1742 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 TYW5A2RUC4 315 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 C6orf222P0C671 652 aaPredicted RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 PCSK1P29120 753 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 FDFT1P37268 417 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 NDST1P52848 882 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 FAXCQ5TGI0 409 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 CYB5D1Q6P9G0 228 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 SLFN11Q7Z7L1 901 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 NT5DC4Q86YG4 428 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 TSPAN16Q9UKR8 245 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 SHBGP04278 402 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 FAM200BP0CF97 657 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 CDH8P55286 799 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 AMHR2Q16671 573 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 OR5B17Q8NGF7 314 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 SLC7A14Q8TBB6 771 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 HELQQ8TDG4 1101 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 ATXN2LQ8WWM7 1075 aaKnown RBP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 STAMBPL1Q96FJ0 436 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 VTA1Q9NP79 307 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 IGF2BP3O00425 579 aaKnown RBP eCLIP15.24■□□□□ 0.03
HDAC6-220ENST00000477528 PSMD3O43242 534 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 MICAL2O94851 1124 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 PMLP29590 882 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 JADE1Q6IE81 842 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 PLEKHH3Q7Z736 793 aa15.24■□□□□ 0.03
HDAC6-220ENST00000477528 URGCPQ8TCY9 931 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms