RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 PLXND1Q9Y4D7 1925 aa12.87□□□□□ -0.35
HDAC6-219ENST00000476625 TBCAO75347 108 aaKnown RBP12.86□□□□□ -0.35
HDAC6-219ENST00000476625 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-219ENST00000476625 DDX6P26196 483 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC6-219ENST00000476625 GJB2P29033 226 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 DDIT3P35638 169 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 MAPK8P45983 427 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 DHPSP49366 369 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-219ENST00000476625 TSPY1Q01534 308 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 DEFB119Q8N690 84 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 PIGKQ92643 395 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 SCNM1Q9BWG6 230 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 PCIF1Q9H4Z3 704 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 TMEM74BQ9NUR3 256 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 EBF1Q9UH73 591 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 SIX4Q9UIU6 781 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 CHD6Q8TD26 2715 aa12.86□□□□□ -0.35
HDAC6-219ENST00000476625 CNOT1A5YKK6 2376 aaKnown RBP12.85□□□□□ -0.35
HDAC6-219ENST00000476625 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 TRAV19A0A0A6YYK7 116 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 SPAARA0A1B0GVQ0 90 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 HYAL3O43820 417 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-219ENST00000476625 PPP1R37O75864 691 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 RHOBTB1O94844 696 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 CYP17A1P05093 508 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 KRT19P08727 400 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 USP17L7P0C7H9 530 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 LMO2P25791 158 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 UBA7P41226 1012 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 PTGER3P43115 390 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 CACNA2D1P54289 1103 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 KDSRQ06136 332 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 ZNF268Q14587 947 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-219ENST00000476625 CYP2U1Q7Z449 544 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 TMEFF1Q8IYR6 380 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 ALLCQ8N6M5 410 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 OR2I1PQ8NGU4 316 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 RASSF8Q8NHQ8 419 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 GATA6Q92908 595 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 ATP2A3Q93084 1043 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 MYLPFQ96A32 169 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 CALML4Q96GE6 196 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 EPSTI1Q96J88 318 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 ZNF560Q96MR9 790 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 TSPAN18Q96SJ8 248 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 ADAM33Q9BZ11 813 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 MTMR12Q9C0I1 747 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 TMEM9BQ9NQ34 198 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 CRTAC1Q9NQ79 661 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 TMEM30AQ9NV96 361 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 SMPD4Q9NXE4 827 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 MBD1Q9UIS9 605 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-219ENST00000476625 KCNG1Q9UIX4 513 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 SNX9Q9Y5X1 595 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 PCDH15Q96QU1 1955 aa12.85□□□□□ -0.35
HDAC6-219ENST00000476625 MYMKA6NI61 221 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 SGK1O00141 431 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 LEFTY2O00292 366 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 KHNYNO15037 678 aaKnown RBP12.84□□□□□ -0.35
HDAC6-219ENST00000476625 TIE1P35590 1138 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 SOWAHAQ2M3V2 549 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 ZNF720Q7Z2F6 126 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 FILIP1Q7Z7B0 1213 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 RASSF3Q86WH2 238 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 SPATA2LQ8IUW3 424 aaPredicted RBP12.84□□□□□ -0.35
HDAC6-219ENST00000476625 BRSK2Q8IWQ3 736 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 ADGRF2Q8IZF7 708 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 CSGALNACT2Q8N6G5 542 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 GLIS3Q8NEA6 775 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 OR5B17Q8NGF7 314 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 LEO1Q8WVC0 666 aaPredicted RBP12.84□□□□□ -0.35
HDAC6-219ENST00000476625 KBTBD7Q8WVZ9 684 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 LARP4BQ92615 738 aaKnown RBP12.84□□□□□ -0.35
HDAC6-219ENST00000476625 ACDQ96AP0 544 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 TRMT2BQ96GJ1 504 aaKnown RBP12.84□□□□□ -0.35
HDAC6-219ENST00000476625 MYRFLQ96LU7 910 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 FNBP1Q96RU3 617 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 CBWD1Q9BRT8 395 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 STRA6Q9BX79 667 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 RNF38Q9H0F5 515 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 PDE11AQ9HCR9 933 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 KLK13Q9UKR3 277 aa12.84□□□□□ -0.35
HDAC6-219ENST00000476625 SRRM3A6NNA2 597 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 H3BQV1 296 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 KLF8O95600 359 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 HDCP19113 662 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 BDNFP23560 247 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 RPL10AP62906 217 aaKnown RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 FAM193AP78312 1265 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 IFRD2Q12894 506 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 KCNB1Q14721 858 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 SF3A1Q15459 793 aaKnown RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 NFE2Q16621 373 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 FBXO43Q4G163 708 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 ARL6IP4Q66PJ3 421 aaKnown RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 TXNDC5Q8NBS9 432 aaKnown RBP12.83□□□□□ -0.36
HDAC6-219ENST00000476625 HPS3Q969F9 1004 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 WBP2Q969T9 261 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 ELMO3Q96BJ8 720 aa12.83□□□□□ -0.36
HDAC6-219ENST00000476625 CNOT6LQ96LI5 555 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms