RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZXDBP98169 803 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 AMPD3Q01432 767 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LMNB2Q03252 620 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FAM160A1Q05DH4 1040 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MYO1EQ12965 1108 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 BMT2Q1RMZ1 405 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 VSTM1Q6UX27 236 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 STXBP4Q6ZWJ1 553 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 WDR5BQ86VZ2 330 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 IQUBQ8NA54 791 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TMEM174Q8WUU8 243 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 EZH1Q92800 747 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ZNF396Q96N95 335 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TTLL2Q9BWV7 592 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 AGPAT3Q9NRZ7 376 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MAGED2Q9UNF1 606 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MYO18AQ92614 2054 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 STAU1O95793 577 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GJA4P35212 333 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GALK1P51570 392 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 USP4Q13107 963 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SRSF5Q13243 272 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SIM2Q14190 667 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PSMD6Q15008 389 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PDGFRLQ15198 375 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SNRNP35Q16560 246 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 EML3Q32P44 896 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FAM26FQ5R3K3 315 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 C4orf50Q6ZRC1 276 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 UNC13DQ70J99 1090 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SPATA2LQ8IUW3 424 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 C12orf56Q8IXR9 622 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MYCBPAPQ8TBZ2 947 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 OSCP1Q8WVF1 389 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DHX58Q96C10 678 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SYT15Q9BQS2 421 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ECT2Q9H8V3 914 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MAGEF1Q9HAY2 307 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MAGEC2Q9UBF1 373 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GMEB2Q9UKD1 530 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 UBE4BO95155 1302 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ACACBO00763 2458 aa13.11□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PVALEFA0A1B0GWK0 134 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 C2orf78A6NCI8 922 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 POLR2DO15514 142 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 EGFP01133 1207 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TNNC2P02585 160 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 USP17L7P0C7H9 530 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PDIA4P13667 645 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PFKLP17858 780 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 BDNFP23560 247 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 USP46P62068 366 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PSMC1P62191 440 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ASIC1P78348 528 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CLDN10P78369 228 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CYP24A1Q07973 514 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SPEM2Q0P670 501 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GRSF1Q12849 480 aaKnown RBP eCLIP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MTF1Q14872 753 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MAPRE1Q15691 268 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CSRP2Q16527 193 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LPAL2Q16609 132 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 NAIF1Q69YI7 327 aaPredicted RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 KIAA1958Q8N8K9 716 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 XXYLT1Q8NBI6 393 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PLEKHO2Q8TD55 490 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PCED1BQ96HM7 432 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CGRRF1Q99675 332 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MRPL45Q9BRJ2 306 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 XYLT2Q9H1B5 865 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 VRTNQ9H8Y1 702 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TMEM30AQ9NV96 361 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CGNQ9P2M7 1197 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RAB23Q9ULC3 237 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PCDHA7Q9UN72 937 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ARHGAP26Q9UNA1 814 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ABCA7Q8IZY2 2146 aa13.1□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 EPG5Q9HCE0 2579 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TRAV19A0A0A6YYK7 116 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CLIC2O15247 247 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 KLRC4O43908 158 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 OLFM2O95897 454 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PDGFRBP09619 1106 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DRD1P21728 446 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CASP1P29466 404 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GNL1P36915 607 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RAP1GAPP47736 663 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 NOP14P78316 857 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 AMPD2Q01433 879 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GAB4Q2WGN9 574 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RESP18Q5W5W9 173 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 HEATR6Q6AI08 1181 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ATL3Q6DD88 541 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PRR23BQ6ZRT6 265 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SCN4BQ8IWT1 228 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CAMKK1Q8N5S9 505 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FAM160A2Q8N612 972 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ARL14EPQ8N8R7 260 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FSIP1Q8NA03 581 aa13.09□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RDH13Q8NBN7 331 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms