RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 HPS4Q9NQG7 708 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 MRPS17Q9Y2R5 130 aaKnown RBP15.08■□□□□ 0
UPF3A-204ENST00000475218 SPECC1L-ADORA2AF8WAN1 911 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 PDXKO00764 312 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 LAMTOR5O43504 91 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 RHOBTB3O94955 611 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 NR3C1P04150 777 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 MYL1P05976 194 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 TAF12Q16514 161 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 ARHGAP29Q52LW3 1261 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 MDH1BQ5I0G3 518 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 KRBA2Q6ZNG9 492 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 ADSSL1Q8N142 457 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 CELF5Q8N6W0 485 aaKnown RBP15.07■□□□□ 0
UPF3A-204ENST00000475218 SPATA17Q96L03 361 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 GCNAQ96QF7 691 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 CYP2S1Q96SQ9 504 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 VRTNQ9H8Y1 702 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 LMAN1LQ9HAT1 526 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 RBM12Q9NTZ6 932 aaKnown RBP15.07■□□□□ 0
UPF3A-204ENST00000475218 GCNT4Q9P109 453 aa15.07■□□□□ 0
UPF3A-204ENST00000475218 DDX6P26196 483 aaKnown RBP eCLIP15.06■□□□□ 0
UPF3A-204ENST00000475218 HOXC13P31276 330 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 GNL1P36915 607 aaPredicted RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 CDH8P55286 799 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 CSTF1Q05048 431 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 TRIM68Q6AZZ1 485 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 MAMSTRQ6ZN01 415 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 SUMF1Q8NBK3 374 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 ZBTB44Q8NCP5 570 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 CSGALNACT1Q8TDX6 532 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 SCAND2PQ9GZW5 306 aaPredicted RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 GKN1Q9NS71 199 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 TDP1Q9NUW8 608 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 C2orf42Q9NWW7 574 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 MAGEC2Q9UBF1 373 aaPredicted RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 NXF1Q9UBU9 619 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 TRAF3IP3Q9Y228 551 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 HELZP42694 1942 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 C2orf78A6NCI8 922 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 DPYSL4O14531 572 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 NCAM2O15394 837 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 FAM163BP0C2L3 166 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 PTPN1P18031 435 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 ATICP31939 592 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 RAP1GAPP47736 663 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 ZXDBP98169 803 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 CYP27A1Q02318 531 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 NCOA4Q13772 614 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 ZACNQ401N2 412 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 VSTM1Q6UX27 236 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 C4orf50Q6ZRC1 276 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 Q6ZS52 159 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 OR6B3Q8NGW1 331 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 MRPS31Q92665 395 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 B3GNT5Q9BYG0 378 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 ZNF518BQ9C0D4 1074 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 C8orf33Q9H7E9 229 aaPredicted RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 ZMYM5Q9UJ78 669 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 MAPK8IP1Q9UQF2 711 aa15.06■□□□□ 0
UPF3A-204ENST00000475218 R3HCC1Q9Y3T6 440 aaKnown RBP15.06■□□□□ 0
UPF3A-204ENST00000475218 SOBPA7XYQ1 873 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 F8VP50 259 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 CLDN5O00501 218 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 LILRB5O75023 590 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 ZNF202O95125 648 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 LMNAP02545 664 aaKnown RBP15.05■□□□□ -0
UPF3A-204ENST00000475218 ARSAP15289 507 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 AVPR1AP37288 418 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 KPNA1P52294 538 aaPredicted RBP15.05■□□□□ -0
UPF3A-204ENST00000475218 TNNC1P63316 161 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 ZNF268Q14587 947 aaPredicted RBP15.05■□□□□ -0
UPF3A-204ENST00000475218 ZCWPW2Q504Y3 356 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 PAQR9Q6ZVX9 377 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 RALGPS2Q86X27 583 aaPredicted RBP15.05■□□□□ -0
UPF3A-204ENST00000475218 SYAP1Q96A49 352 aaPredicted RBP15.05■□□□□ -0
UPF3A-204ENST00000475218 MSANTD3Q96H12 275 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 TTLL2Q9BWV7 592 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 SNX25Q9H3E2 840 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 SEMA4AQ9H3S1 761 aa15.05■□□□□ -0
UPF3A-204ENST00000475218 AKAP3O75969 853 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 PLCB2Q00722 1185 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 TRPC3Q13507 836 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 CCINQ13939 588 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 MAPRE1Q15691 268 aaKnown RBP15.04■□□□□ -0
UPF3A-204ENST00000475218 ZNF77Q15935 545 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 NAIF1Q69YI7 327 aaPredicted RBP15.04■□□□□ -0
UPF3A-204ENST00000475218 SV2AQ7L0J3 742 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 ARL14EPQ8N8R7 260 aaPredicted RBP15.04■□□□□ -0
UPF3A-204ENST00000475218 B3GALNT2Q8NCR0 500 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 TMC2Q8TDI7 906 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 EBF3Q9H4W6 596 aa15.04■□□□□ -0
UPF3A-204ENST00000475218 UXTQ9UBK9 157 aaPredicted RBP15.04■□□□□ -0
UPF3A-204ENST00000475218 GRIK1P39086 918 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 NOP14P78316 857 aaKnown RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 SATB1Q01826 763 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 USP4Q13107 963 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 BIRC3Q13489 604 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 KCNB1Q14721 858 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 PON2Q15165 354 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms