RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 VNN1O95497 513 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 GNL1P36915 607 aaPredicted RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 AVPR1AP37288 418 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 SNRPFP62306 86 aaKnown RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 ZXDBP98169 803 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 PKN3Q6P5Z2 889 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 ZC3H14Q6PJT7 736 aaKnown RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 OR6B3Q8NGW1 331 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 PARD3BQ8TEW8 1205 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 MRPS31Q92665 395 aaKnown RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 TRMT2BQ96GJ1 504 aaKnown RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 FUBP3Q96I24 572 aaKnown RBP eCLIP17.82■□□□□ 0.44
USP40-212ENST00000473191 SMYD3Q9H7B4 428 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 C8orf33Q9H7E9 229 aaPredicted RBP17.82■□□□□ 0.44
USP40-212ENST00000473191 TDP1Q9NUW8 608 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 EXOC1Q9NV70 894 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 FRYLO94915 3013 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 F5P12259 2224 aa17.82■□□□□ 0.44
USP40-212ENST00000473191 KINO60870 393 aaKnown RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 TACC1O75410 805 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 C4BPAP04003 597 aaKnown RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 GRIK1P39086 918 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 MLLT6P55198 1093 aaPredicted RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 KRT85P78386 507 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 RALGPS2Q86X27 583 aaPredicted RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 KIAA2013Q8IYS2 634 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 ARL14EPQ8N8R7 260 aaPredicted RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 MYCBPAPQ8TBZ2 947 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 ZNF518BQ9C0D4 1074 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 SEMA4AQ9H3S1 761 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 FBRSL1Q9HCM7 1045 aaKnown RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 POLR3BQ9NW08 1133 aaPredicted RBP17.81■□□□□ 0.44
USP40-212ENST00000473191 ZSCAN32Q9NX65 697 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 GCNT4Q9P109 453 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 MAPK8IP1Q9UQF2 711 aa17.81■□□□□ 0.44
USP40-212ENST00000473191 FAM237AA0A1B0GTK4 181 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 F8VP50 259 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 RPN1P04843 607 aaKnown RBP17.8■□□□□ 0.44
USP40-212ENST00000473191 DDX6P26196 483 aaKnown RBP eCLIP17.8■□□□□ 0.44
USP40-212ENST00000473191 MAGEA11P43364 429 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 SYKP43405 635 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 CLDN10P78369 228 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 TRPC3Q13507 836 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 RUNX3Q13761 415 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 CCINQ13939 588 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 C1orf220Q5T0J3 134 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 SCARA5Q6ZMJ2 495 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 C4orf50Q6ZRC1 276 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 B3GNT5Q9BYG0 378 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 SNX25Q9H3E2 840 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.8■□□□□ 0.44
USP40-212ENST00000473191 PCDHGA2Q9Y5H1 932 aa17.8■□□□□ 0.44
USP40-212ENST00000473191 ANTXRLA6NF34 631 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 NR3C1P04150 777 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 PTPN1P18031 435 aaKnown RBP17.79■□□□□ 0.44
USP40-212ENST00000473191 TNNC1P63316 161 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 DPYDQ12882 1025 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 SRSF5Q13243 272 aaKnown RBP17.79■□□□□ 0.44
USP40-212ENST00000473191 ORC1Q13415 861 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 BIRC3Q13489 604 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 ZNF77Q15935 545 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 LPAL2Q16609 132 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 ITPRIPL2Q3MIP1 535 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 FSTL4Q6MZW2 842 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 ATRIPQ8WXE1 791 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 SPATA17Q96L03 361 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 HINFPQ9BQA5 517 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 CGNQ9P2M7 1197 aaKnown RBP17.79■□□□□ 0.44
USP40-212ENST00000473191 UXTQ9UBK9 157 aaPredicted RBP17.79■□□□□ 0.44
USP40-212ENST00000473191 WNT6Q9Y6F9 365 aa17.79■□□□□ 0.44
USP40-212ENST00000473191 A8MXQ7 604 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 K7ESF4 209 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 PHACTR2O75167 634 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 STAU1O95793 577 aaKnown RBP17.78■□□□□ 0.44
USP40-212ENST00000473191 PLCB2Q00722 1185 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 FAM160A1Q05DH4 1040 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 PSMD2Q13200 908 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 NCOA4Q13772 614 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 MTF1Q14872 753 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 CEP135Q66GS9 1140 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 SPOPLQ6IQ16 392 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 VSTM1Q6UX27 236 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 MAMSTRQ6ZN01 415 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 DENND5BQ6ZUT9 1274 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 PAQR9Q6ZVX9 377 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 SLC9A9Q8IVB4 645 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 FSIP1Q8NA03 581 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 B3GALNT2Q8NCR0 500 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 MSANTD3Q96H12 275 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 KCNK16Q96T55 309 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 RNF38Q9H0F5 515 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 LINC00597Q9H2U6 94 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 THG1LQ9NWX6 298 aaKnown RBP17.78■□□□□ 0.44
USP40-212ENST00000473191 HMGXB4Q9UGU5 601 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 DMXL1Q9Y485 3027 aa17.78■□□□□ 0.44
USP40-212ENST00000473191 DNAH14Q0VDD8 3507 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 TRAV19A0A0A6YYK7 116 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 CHURC1-FNTBB4DL54 471 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 SCAMP3O14828 347 aaKnown RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 EGFP01133 1207 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms