RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 DUSP16Q9BY84 665 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CARD9Q9H257 536 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 ST7Q9NRC1 585 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CYTH4Q9UIA0 394 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 ADAM28Q9UKQ2 775 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 SF3B1O75533 1304 aaKnown RBP eCLIP13.53□□□□□ -0.248e-6■■■■■ 107
VPS13D-205ENST00000473099 TRIM43BA6NCK2 446 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 TMEM110-MUSTN1A8MSY1 372 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 KCNK3O14649 394 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 NRP1O14786 923 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 CTIFO43310 598 aaKnown RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 NCK2O43639 380 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 ERBB2P04626 1255 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 FAM200BP0CF97 657 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 KRT3P12035 628 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 NPR3P17342 541 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 COMTP21964 271 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 ADORA2BP29275 332 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 CTNNA1P35221 906 aaKnown RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 PDE4CQ08493 712 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 PPIGQ13427 754 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 PAN2Q504Q3 1202 aaKnown RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 MDH1BQ5I0G3 518 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 INTS6LQ5JSJ4 861 aaKnown RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 CYP4A22Q5TCH4 519 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 C4orf50Q6ZRC1 276 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 FUKQ8N0W3 1084 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 TOP1MTQ969P6 601 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 TRIM43Q96BQ3 446 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 SMARCD1Q96GM5 515 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 NAP1L3Q99457 506 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-205ENST00000473099 UBXN6Q9BZV1 441 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 IL23AQ9NPF7 189 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 DNAJB4Q9UDY4 337 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 COL4A6Q14031 1691 aa13.52□□□□□ -0.25
VPS13D-205ENST00000473099 PLXNA3P51805 1871 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 UQCRHLA0A096LP55 91 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 PSTPIP1O43586 416 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 DGKIO75912 1065 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 OAZ2O95190 189 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 UQCRHP07919 91 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 CSF2RAP15509 400 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 ACAT1P24752 427 aaKnown RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 C2CD6Q53TS8 623 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 PMF1Q6P1K2 205 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 FAM171BQ6P995 826 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 ARCQ7LC44 396 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 FAM35AQ86V20 835 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 CREG2Q8IUH2 290 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 CMTR2Q8IYT2 770 aaKnown RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 DCP1BQ8IZD4 617 aaKnown RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 ACTRT1Q8TDG2 376 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 HASPINQ8TF76 798 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 KCTD13Q8WZ19 329 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 RABGGTAQ92696 567 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 GOLGA1Q92805 767 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 CD101Q93033 1021 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 MCEEQ96PE7 176 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 GOLPH3Q9H4A6 298 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 CRTAC1Q9NQ79 661 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 TTC7AQ9ULT0 858 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 PACSIN2Q9UNF0 486 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 PRG3Q9Y2Y8 225 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 PCDHA3Q9Y5H8 950 aa13.51□□□□□ -0.25
VPS13D-205ENST00000473099 TIMM13Q9Y5L4 95 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-205ENST00000473099 FAM170AA1A519 330 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 OR6C75A6NL08 312 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 E5RJQ4 531 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 GOLGA8SH3BPF8 625 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 H7C4K7 107 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 I3L4J1 428 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 DDX3YO15523 660 aaKnown RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SART1O43290 800 aaKnown RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 HCRTO43612 131 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 B4GALT3O60512 393 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SRGAP2O75044 1071 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 ATP2C2O75185 946 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 TADA3O75528 432 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 FBXO21O94952 628 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 ITGB1P05556 798 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 GALTP07902 379 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 IGFBP6P24592 240 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SLC11A1P49279 550 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 ALDH7A1P49419 539 aaKnown RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SLC6A3Q01959 620 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SMARCB1Q12824 385 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 NFE2Q16621 373 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 FAM102AQ5T9C2 384 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 SEL1L2Q5TEA6 688 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 LRRC38Q5VT99 294 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 OR6B2Q6IFH4 312 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF280DQ6N043 979 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 RHOT1Q8IXI2 618 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 RASGEF1CQ8N431 466 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 COG1Q8WTW3 980 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 UBXN4Q92575 508 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 VWCEQ96DN2 955 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 PCED1BQ96HM7 432 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms