RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NECTIN3	Q9NQS3	549 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	GJB4	Q9NTQ9	266 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TBC1D23	Q9NUY8	699 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	SSX2IP	Q9Y2D8	614 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TRGV11	A0A075B6L2	103 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044		A0A087WV62	115 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CENPVL1	A0A0U1RR11	272 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	GOLGA6L3	A6NEY3	463 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044		F5H423	210 aa	Predicted RBP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044		H7C4K7	107 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	RAB27B	O00194	218 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	PROM1	O43490	865 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	RRP9	O43818	475 aa	Known RBP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	EGR2	P11161	476 aa	Predicted RBP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	TPH1	P17752	444 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	GABRB3	P28472	473 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CD6	P30203	668 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	PTDSS1	P48651	473 aa	Known RBP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	MAPK10	P53779	464 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	GRAMD1B	Q3KR37	738 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	GORAB	Q5T7V8	394 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	ABHD17B	Q5VST6	288 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	ERAP2	Q6P179	960 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	KIAA0408	Q6ZU52	694 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	MRGPRE	Q86SM8	312 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	GPR149	Q86SP6	731 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	EXOC8	Q8IYI6	725 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	VPS37A	Q8NEZ2	397 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	BPIFB1	Q8TDL5	484 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	POF1B	Q8WVV4	589 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	FAM136A	Q96C01	138 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CRB3	Q9BUF7	120 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	MAGEB5	Q9BZ81	275 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CXorf36	Q9H7Y0	433 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	HEYL	Q9NQ87	328 aa	Predicted RBP	4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CDC23	Q9UJX2	597 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	TBC1D30	Q9Y2I9	924 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	CEP83	Q9Y592	693 aa		4.59	□□□□□ -1.67
PTCD3-209	ENST00000472044	LOC102724159	A0A0B4J2E5	919 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PIPSL	A2A3N6	862 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	hCG_1984214	I3L0E3	225 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	FFAR2	O15552	330 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	LPXN	O60711	386 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	TCEA3	O75764	348 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	CSF1R	P07333	972 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	BLOC1S1	P78537	153 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	TP53BP2	Q13625	1128 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PWP2	Q15269	919 aa	Known RBP	4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	ARHGAP40	Q5TG30	622 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	VPS53	Q5VIR6	699 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	RRAGB	Q5VZM2	374 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PGBD2	Q6P3X8	592 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	MZT2A	Q6P582	158 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	KCTD20	Q7Z5Y7	419 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	DTX2	Q86UW9	622 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	CCDC150	Q8NCX0	1101 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PPP2R3C	Q969Q6	453 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	LRRC46	Q96FV0	321 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	SNX27	Q96L92	541 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	FAM227B	Q96M60	508 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	NRDE2	Q9H7Z3	1164 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTPRH	Q9HD43	1115 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	TBCCD1	Q9NVR7	557 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	RGL1	Q9NZL6	768 aa		4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	MRPS17	Q9Y2R5	130 aa	Known RBP	4.58	□□□□□ -1.68
PTCD3-209	ENST00000472044	UNC119B	A6NIH7	251 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	CD3EAP	O15446	510 aa	Known RBP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	NDST3	O95803	873 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ADRB1	P08588	477 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	IDE	P14735	1019 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	PPP3CB	P16298	524 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	TYRP1	P17643	537 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	EGR1	P18146	543 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ALDH9A1	P49189	494 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	NXPH1	P58417	271 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ICA1	Q05084	483 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ITIH3	Q06033	890 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	CCNI	Q14094	377 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	DHX8	Q14562	1220 aa	Known RBP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	STARD3	Q14849	445 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	LY6G5C	Q5SRR4	150 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	CERCAM	Q5T4B2	595 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	FNDC7	Q5VTL7	733 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	RGS7BP	Q6MZT1	257 aa	Predicted RBP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	VWA1	Q6PCB0	445 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC15A3	Q8IY34	581 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZNF527	Q8NB42	609 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	GLIS1	Q8NBF1	620 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC30A5	Q8TAD4	765 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	SSH3	Q8TE77	659 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	PTCD3	Q96EY7	689 aa	Known RBP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZDHHC12	Q96GR4	267 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZNF668	Q96K58	619 aa	Predicted RBP	4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	ZBTB26	Q9HCK0	441 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	TMEM8A	Q9HCN3	771 aa		4.57	□□□□□ -1.68
PTCD3-209	ENST00000472044	SLC2A4RG	Q9NR83	387 aa		4.57	□□□□□ -1.68

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