RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 ARHGAP15Q53QZ3 475 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 MDH1BQ5I0G3 518 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 CNNM4Q6P4Q7 775 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 PAQR9Q6ZVX9 377 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 UNC13DQ70J99 1090 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 NT5DC4Q86YG4 428 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 SPEM1Q8N4L4 309 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 TOP6BLQ8N6T0 577 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 CELF5Q8N6W0 485 aaKnown RBP8.65□□□□□ -1.02
USP48-207ENST00000471752 IQUBQ8NA54 791 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 KIAA0895Q8NCT3 520 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 CACTINQ8WUQ7 758 aaKnown RBP8.65□□□□□ -1.02
USP48-207ENST00000471752 PCED1BQ96HM7 432 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 ZNF396Q96N95 335 aaPredicted RBP8.65□□□□□ -1.02
USP48-207ENST00000471752 MMS19Q96T76 1030 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 ZNF518BQ9C0D4 1074 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 EPC1Q9H2F5 836 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 SEMA4AQ9H3S1 761 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 SMOC1Q9H4F8 434 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 SMYD3Q9H7B4 428 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 TMEM206Q9H813 350 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 RXFP3Q9NSD7 469 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 TDP1Q9NUW8 608 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 MRPS17Q9Y2R5 130 aaKnown RBP8.65□□□□□ -1.02
USP48-207ENST00000471752 PCDHGA2Q9Y5H1 932 aa8.65□□□□□ -1.02
USP48-207ENST00000471752 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.65□□□□□ -1.02
USP48-207ENST00000471752 AKAP13Q12802 2813 aa8.65□□□□□ -1.03
USP48-207ENST00000471752 MIA3Q5JRA6 1907 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 DCDC2BA2VCK2 349 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 LRRIQ3A6PVS8 624 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 F8VP50 259 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 DCLK1O15075 740 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 NCAM2O15394 837 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 HNRNPLP14866 589 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP48-207ENST00000471752 PTPN1P18031 435 aaKnown RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 WARSP23381 471 aaKnown RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 PAX3P23760 479 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 GJA4P35212 333 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 GNL1P36915 607 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 PNPLA4P41247 253 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 MYL7Q01449 175 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 CYP27A1Q02318 531 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 VEPH1Q14D04 833 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 PSMD6Q15008 389 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 ZNF77Q15935 545 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 WDR72Q3MJ13 1102 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 TMEM196Q5HYL7 178 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 TDRD10Q5VZ19 366 aaKnown RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 SPOPLQ6IQ16 392 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 PRR23BQ6ZRT6 265 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 RALGPS2Q86X27 583 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 SPATA2LQ8IUW3 424 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 SCAMP5Q8TAC9 235 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 SH3RF2Q8TEC5 729 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 C2orf15Q8WU43 125 aaKnown RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 E2F7Q96AV8 911 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 ANKRD36BP1Q96IX9 119 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 MYRFLQ96LU7 910 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 ZNF560Q96MR9 790 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 KCNK16Q96T55 309 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 CGRRF1Q99675 332 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 GOLPH3LQ9H4A5 285 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 C8orf33Q9H7E9 229 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 ZDHHC4Q9NPG8 344 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 DMAC2Q9NW81 257 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 OBP2AQ9NY56 170 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 DLL3Q9NYJ7 618 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 NXF1Q9UBU9 619 aaKnown RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 HMGXB4Q9UGU5 601 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 CHORDC1Q9UHD1 332 aaPredicted RBP8.64□□□□□ -1.03
USP48-207ENST00000471752 INVSQ9Y283 1065 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 CHD6Q8TD26 2715 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 PATJQ8NI35 1801 aa8.64□□□□□ -1.03
USP48-207ENST00000471752 ASPMQ8IZT6 3477 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 TRDMT1O14717 391 aaKnown RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 EIF3DO15371 548 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP48-207ENST00000471752 RNF40O75150 1001 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 BEST1O76090 585 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 TNNC2P02585 160 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 C4BPAP04003 597 aaKnown RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 CSH1P0DML2 217 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 CSH2P0DML3 217 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 TNNI1P19237 187 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 ABCD1P33897 745 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 AVPR1AP37288 418 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 GRIK1P39086 918 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 LHX1P48742 406 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 ATXN1P54253 815 aaKnown RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 MLLT6P55198 1093 aaPredicted RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 IFRD2Q12894 506 aaPredicted RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 ALCAMQ13740 583 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 NFE2Q16621 373 aaPredicted RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 BMT2Q1RMZ1 405 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 EML3Q32P44 896 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 KMT5BQ4FZB7 885 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 CFAP221Q4G0U5 840 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 EMC10Q5UCC4 262 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 ZC3H14Q6PJT7 736 aaKnown RBP8.63□□□□□ -1.03
USP48-207ENST00000471752 SCARA5Q6ZMJ2 495 aa8.63□□□□□ -1.03
USP48-207ENST00000471752 WDR49Q8IV35 697 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms