RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ABHD8Q96I13 439 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RPGRIP1Q96KN7 1286 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PPM1MQ96MI6 270 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 WDR24Q96S15 920 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LSM14BQ9BX40 385 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DRC3Q9H069 523 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SIL1Q9H173 461 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SOX17Q9H6I2 414 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LIN28AQ9H9Z2 209 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CYP26B1Q9NR63 512 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SCAF8Q9UPN6 1271 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DMTF1Q9Y222 760 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF536O15090 1300 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDH11XQ9BZA7 1347 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDH11YQ9BZA8 1340 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LOC100289279A0A1B0GTE1 492 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LCHNA4D1U4 455 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA8JA6NMD2 632 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA8TH3BQL2 631 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SGK1O00141 431 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PSMD14O00487 310 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TRDMT1O14717 391 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CAPN9O14815 690 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GAS7O60861 476 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 FGF18O76093 207 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 USP1O94782 785 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DDX58O95786 925 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA8HP0CJ92 632 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC166P0CW27 439 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 THEGLP0DJG4 465 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ATP2A2P16615 1042 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TFEBP19484 476 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 FGFR4P22455 802 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DYNC1I2Q13409 638 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TRIM14Q14142 442 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 FRG1Q14331 258 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LLGL1Q15334 1064 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF124Q15973 351 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MOGQ16653 247 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 Q3ZCU0 254 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CFAP221Q4G0U5 840 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 NOL9Q5SY16 702 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RNASEH2BQ5TBB1 312 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GKAP1Q5VSY0 366 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SNX30Q5VWJ9 437 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ALKBH5Q6P6C2 394 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 B3GNT6Q6ZMB0 384 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 BNIPLQ7Z465 357 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM83AQ86UY5 434 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 NKAIN4Q8IVV8 208 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZC3H7AQ8IWR0 971 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ANKRD35Q8N283 1001 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGEF39Q8N4T4 335 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SHCBP1Q8NEM2 672 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 FLAD1Q8NFF5 587 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 KIFAP3Q92845 792 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SMARCE1Q969G3 411 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZDHHC15Q96MV8 337 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ISCA1Q9BUE6 129 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MENTQ9BUN1 341 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 STMN4Q9H169 189 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TCF7L1Q9HCS4 588 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GPRC5CQ9NQ84 441 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MAN1C1Q9NR34 630 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 NKIRAS2Q9NYR9 191 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 EHD2Q9NZN4 543 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DPP7Q9UHL4 492 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 L1RE1Q9UN81 338 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SH3GLB1Q9Y371 365 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHB6Q9Y5E3 794 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 IQANK1A0A1B0GTG1 560 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 B4DLN1 442 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 KIF28PB7ZC32 967 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ST8SIA5O15466 376 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 AP1G1O43747 822 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PALMO75781 387 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ITGB1P05556 798 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PDHA1P08559 390 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CYP3A4P08684 503 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 LTA4HP09960 611 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CDH3P22223 829 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SFPQP23246 707 aaKnown RBP eCLIP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 NOS3P29474 1203 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 FXR1P51114 621 aaKnown RBP eCLIP5.08□□□□□ -1.63e-8■■■■□ 23.7
CCDC88A-209ENST00000456975 AFF1P51825 1210 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 USP14P54578 494 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SLBPQ14493 270 aaKnown RBP eCLIP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GRIK5Q16478 980 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 MAPKAPK3Q16644 382 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ANO4Q32M45 955 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 HABP4Q5JVS0 413 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC35F1Q5T1Q4 408 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 NBPF12Q5TAG4 269 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 C8orf74Q6P047 294 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 MIS18BP1Q6P0N0 1132 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 KLC3Q6P597 504 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 STK32CQ86UX6 486 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GALNT11Q8NCW6 608 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RFWD2Q8NHY2 731 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 KLHDC4Q8TBB5 520 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms