RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 C1orf228Q6PIY5 440 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 MON1AQ86VX9 555 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 MAML2Q8IZL2 1156 aaPredicted RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 FMR1NBQ8N0W7 255 aaPredicted RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 CELF5Q8N6W0 485 aaKnown RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 BPIFB1Q8TDL5 484 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 CSGALNACT1Q8TDX6 532 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 MRPS31Q92665 395 aaKnown RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 PCED1BQ96HM7 432 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 SNX25Q9H3E2 840 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 KIF9Q9HAQ2 790 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 MAGED2Q9UNF1 606 aaPredicted RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 FRMD4BQ9Y2L6 1034 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 TRIM66O15016 1216 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 PHACTR2O75167 634 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 SP9P0CG40 484 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 BDNFP23560 247 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 AVPR1AP37288 418 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 MCCD1P59942 119 aaPredicted RBP12.85□□□□□ -0.35
USP40-210ENST00000454354 DLG4P78352 724 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 NCOA4Q13772 614 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 ZNF528Q3MIS6 628 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 ZCWPW2Q504Y3 356 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 ZNF667Q5HYK9 610 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 MDH1BQ5I0G3 518 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 TXNDC8Q6A555 127 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 GPIHBP1Q8IV16 184 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 SCN4BQ8IWT1 228 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 MAB21L3Q8N8X9 362 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 ENGASEQ8NFI3 743 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 OR6B3Q8NGW1 331 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 FAM3CQ92520 227 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 CCDC34Q96HJ3 373 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 IER2Q9BTL4 223 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 CHRDQ9H2X0 955 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 DPEP3Q9H4B8 488 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 SMYD3Q9H7B4 428 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 C8orf33Q9H7E9 229 aaPredicted RBP12.85□□□□□ -0.35
USP40-210ENST00000454354 PRMT8Q9NR22 394 aaPredicted RBP12.85□□□□□ -0.35
USP40-210ENST00000454354 NXF1Q9UBU9 619 aaKnown RBP12.85□□□□□ -0.35
USP40-210ENST00000454354 FBXO4Q9UKT5 387 aa12.85□□□□□ -0.35
USP40-210ENST00000454354 A8MXQ7 604 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 AKAP3O75969 853 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 PTPN1P18031 435 aaKnown RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 NR2F2P24468 414 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 NOP14P78316 857 aaKnown RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 CYP27A1Q02318 531 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 EDRF1Q3B7T1 1238 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 CEP135Q66GS9 1140 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 MAMSTRQ6ZN01 415 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 DENND5BQ6ZUT9 1274 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 INTS8Q75QN2 995 aaKnown RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 SV2AQ7L0J3 742 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 ASCL5Q7RTU5 278 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 B3GALNT2Q8NCR0 500 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 TAF4BQ92750 862 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 USP13Q92995 863 aaPredicted RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 NKD2Q969F2 451 aaPredicted RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 ZFYVE19Q96K21 471 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 C8orf48Q96LL4 319 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 TTLL2Q9BWV7 592 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 ELOVL4Q9GZR5 314 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 SMG9Q9H0W8 520 aaKnown RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 SEMA4AQ9H3S1 761 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 TDP1Q9NUW8 608 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 SPATA6Q9NWH7 488 aaPredicted RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 NDRG2Q9UN36 371 aaKnown RBP12.84□□□□□ -0.35
USP40-210ENST00000454354 CCL26Q9Y258 94 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 ATG2BQ96BY7 2078 aa12.84□□□□□ -0.35
USP40-210ENST00000454354 F8VP50 259 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 SPECC1L-ADORA2AF8WAN1 911 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 LAMTOR5O43504 91 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 ASS1P00966 412 aaKnown RBP12.83□□□□□ -0.36
USP40-210ENST00000454354 TCF3P15923 654 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 PFKLP17858 780 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 CCNE1P24864 410 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 RPL13P26373 211 aaKnown RBP12.83□□□□□ -0.36
USP40-210ENST00000454354 ANXA13P27216 316 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 CTHP32929 405 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 GRIK1P39086 918 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 VAMP7P51809 220 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 FAM160A1Q05DH4 1040 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 USP4Q13107 963 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 PNOCQ13519 176 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 SGSM1Q2NKQ1 1148 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 COBLL1Q53SF7 1204 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 ZC3H14Q6PJT7 736 aaKnown RBP12.83□□□□□ -0.36
USP40-210ENST00000454354 RALGPS2Q86X27 583 aaPredicted RBP12.83□□□□□ -0.36
USP40-210ENST00000454354 SPATA20Q8TB22 786 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 RIN3Q8TB24 985 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 NELL1Q92832 810 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 FAM83CQ9BQN1 747 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 B3GNT5Q9BYG0 378 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 SDCBP2Q9H190 292 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 TMEM30AQ9NV96 361 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 THG1LQ9NWX6 298 aaKnown RBP12.83□□□□□ -0.36
USP40-210ENST00000454354 GTSE1Q9NYZ3 720 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 EHD2Q9NZN4 543 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 GCNT4Q9P109 453 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 MAPK8IP1Q9UQF2 711 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms