RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 TTC16Q8NEE8 873 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 FAM3CQ92520 227 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 TAF4BQ92750 862 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 RSPRY1Q96DX4 576 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 TNIP3Q96KP6 325 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 GSDMAQ96QA5 445 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 MED10Q9BTT4 135 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 GTPBP4Q9BZE4 634 aaKnown RBP16.54■□□□□ 0.24
LIMS1-210ENST00000449684 ELOVL4Q9GZR5 314 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 SMG9Q9H0W8 520 aaKnown RBP16.54■□□□□ 0.24
LIMS1-210ENST00000449684 SMYD3Q9H7B4 428 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 VRTNQ9H8Y1 702 aa16.54■□□□□ 0.24
LIMS1-210ENST00000449684 TRAV19A0A0A6YYK7 116 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 SOBPA7XYQ1 873 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 CETN3O15182 167 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 LAMTOR5O43504 91 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 KINO60870 393 aaKnown RBP16.53■□□□□ 0.24
LIMS1-210ENST00000449684 VNN1O95497 513 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 PRAMEF12O95522 483 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 TARSP26639 723 aaKnown RBP16.53■□□□□ 0.24
LIMS1-210ENST00000449684 RAP1GAPP47736 663 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 CDH8P55286 799 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 ZNF658Q5TYW1 1059 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-210ENST00000449684 CC2D1AQ6P1N0 951 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-210ENST00000449684 C1orf228Q6PIY5 440 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 DENND5BQ6ZUT9 1274 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 MON1AQ86VX9 555 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 TTC8Q8TAM2 541 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 SPATA17Q96L03 361 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 MYRFLQ96LU7 910 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 CEP295NLQ96MC4 621 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 DPEP3Q9H4B8 488 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 C8orf33Q9H7E9 229 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-210ENST00000449684 KIF9Q9HAQ2 790 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 TDP1Q9NUW8 608 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 DLGAP2Q9P1A6 1054 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 MIA3Q5JRA6 1907 aa16.53■□□□□ 0.24
LIMS1-210ENST00000449684 F8VP50 259 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 HLA-DRAP01903 254 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 CKMP06732 381 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 TRIM49P0CI25 452 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 TRIM49CP0CI26 452 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 EPB41P11171 864 aaKnown RBP16.52■□□□□ 0.24
LIMS1-210ENST00000449684 CCNE1P24864 410 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 GCLMP48507 274 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 STIM1Q13586 685 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 EDRF1Q3B7T1 1238 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 TMEM150AQ86TG1 271 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 ENGASEQ8NFI3 743 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 ELMO3Q96BJ8 720 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 MSANTD3Q96H12 275 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 ZFYVE19Q96K21 471 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 TIGD1Q96MW7 591 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 DNAI2Q9GZS0 605 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.52■□□□□ 0.24
LIMS1-210ENST00000449684 TRPM5Q9NZQ8 1165 aa16.52■□□□□ 0.24
LIMS1-210ENST00000449684 NCANO14594 1321 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 NUP210Q8TEM1 1887 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-210ENST00000449684 STX10O60499 249 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 GFRA3O60609 400 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 ABL1P00519 1130 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 USP17L7P0C7H9 530 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 PRCPP42785 496 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 PDE6CP51160 858 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 IFRD2Q12894 506 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-210ENST00000449684 FRMD5Q7Z6J6 570 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 ERCC4Q92889 916 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-210ENST00000449684 USP13Q92995 863 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-210ENST00000449684 EEF2KMTQ96G04 330 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 C8orf48Q96LL4 319 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 LRRC3BQ96PB8 259 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 ZNF518BQ9C0D4 1074 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 GKN1Q9NS71 199 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 PCDHA5Q9Y5H7 936 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 TICRRQ7Z2Z1 1910 aa16.51■□□□□ 0.23
LIMS1-210ENST00000449684 ZNF638Q14966 1978 aaKnown RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 CLDN5O00501 218 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 HDCP19113 662 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 NBL1P41271 181 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 RPS9P46781 194 aaKnown RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 MLLT6P55198 1093 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 ENPEPQ07075 957 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 TCERG1LQ5VWI1 586 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 SPOPLQ6IQ16 392 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 ZC3H14Q6PJT7 736 aaKnown RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 ACOT1Q86TX2 421 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 NKD2Q969F2 451 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 SLITRK1Q96PX8 696 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 B3GNT5Q9BYG0 378 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 LMAN1LQ9HAT1 526 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 TMEM8AQ9HCN3 771 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 GTSE1Q9NYZ3 720 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 CIZ1Q9ULV3 898 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-210ENST00000449684 CCL26Q9Y258 94 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 NME7Q9Y5B8 376 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 COL4A3Q01955 1670 aa16.5■□□□□ 0.23
LIMS1-210ENST00000449684 SPECC1L-ADORA2AF8WAN1 911 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ARNTLO00327 626 aa16.49■□□□□ 0.23
LIMS1-210ENST00000449684 ASS1P00966 412 aaKnown RBP16.49■□□□□ 0.23
LIMS1-210ENST00000449684 GTF2H1P32780 548 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms