RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CRHR2Q13324 411 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 RASSF3Q86WH2 238 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 CCDC197Q8NCU1 140 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SCG3Q8WXD2 468 aaKnown RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 TEPSINQ96N21 525 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 RBM15Q96T37 977 aaKnown RBP eCLIP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 NIFKQ9BYG3 293 aaKnown RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 GPATCH2LQ9NWQ4 482 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 MOSPD1Q9UJG1 213 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 MAFBQ9Y5Q3 323 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 ARF4P18085 180 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ST8SIA6P61647 398 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SLFN11Q7Z7L1 901 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 NOP9Q86U38 636 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SLC2A14Q8TDB8 520 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TTC17Q96AE7 1141 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 RPRD1AQ96P16 312 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 PGLYRP2Q96PD5 576 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TSPYL2Q9H2G4 693 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SMYD3Q9H7B4 428 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TRPM5Q9NZQ8 1165 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 XPO7Q9UIA9 1087 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 USP18Q9UMW8 372 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 BAZ2AQ9UIF9 1905 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ITGB4P16144 1822 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 UNCXA6NJT0 531 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 CLGNO14967 610 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 PSMD3O43242 534 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 COILP38432 576 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 MAGOHP61326 146 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 EFEMP1Q12805 493 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SLC35G1Q2M3R5 365 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 DDX53Q86TM3 631 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 FAM71DQ8N9W8 422 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 NOA1Q8NC60 698 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 FGFBP2Q9BYJ0 223 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 CYP4F11Q9HBI6 524 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 DYRK4Q9NR20 520 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ABCF3Q9NUQ8 709 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 NEU2Q9Y3R4 380 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 CKMP06732 381 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ADIGQ0VDE8 80 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SPARCL1Q14515 664 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 EPM2AIP1Q7L775 607 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 PPFIBP2Q8ND30 876 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 OR5B17Q8NGF7 314 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 LPPQ93052 612 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 BHMTQ93088 406 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 LENG1Q96BZ8 264 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SMARCD1Q96GM5 515 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 IKZF4Q9H2S9 585 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 SARS2Q9NP81 518 aaKnown RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 AP3B1O00203 1094 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 MBL2P11226 248 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 EPHB3P54753 998 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 KCNMA1Q12791 1236 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 PDK2Q15119 407 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TFDP3Q5H9I0 405 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 BSNDQ8WZ55 320 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ERP44Q9BS26 406 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 UBA6A0AVT1 1052 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 MTSS1O43312 755 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF862O60290 1169 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 MAP3K6O95382 1288 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ASGR1P07306 291 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TAC1P20366 129 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 DRP2Q13474 957 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF268Q14587 947 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 KCNA10Q16322 511 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 PHLDB3Q6NSJ2 640 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TAS2R42Q7RTR8 314 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 CEP120Q8N960 986 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TTC8Q8TAM2 541 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 VCPIP1Q96JH7 1222 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 C9orf72Q96LT7 481 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 ZFATQ9P243 1243 aa7.73□□□□□ -1.17
SYNE1-213ENST00000448038 RGS17Q9UGC6 210 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-213ENST00000448038 TREHO43280 583 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CCDC130P13994 396 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 PCSK7Q16549 785 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 MEA1Q16626 185 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ATG16L1Q676U5 607 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FOXR2Q6PJQ5 311 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TMEM86AQ8N2M4 240 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 PPHLN1Q8NEY8 458 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 TFB1MQ8WVM0 346 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 RIN2Q8WYP3 895 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 FTHL17Q9BXU8 183 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 DHX33Q9H6R0 707 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 AP4E1Q9UPM8 1137 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 C2CD2Q9Y426 696 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 SLC12A8A0AV02 714 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGAP42A6NI28 874 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 E5RI56 91 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 CTIFO43310 598 aaKnown RBP7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ETFBP38117 255 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 PRKCZQ05513 592 aa7.72□□□□□ -1.17
SYNE1-213ENST00000448038 ZACNQ401N2 412 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms